Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    43   1e-04
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si...    42   3e-04
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si...    41   6e-04
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    40   0.001
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si...    40   0.001
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si...    39   0.002
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si...    38   0.004
At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2) i...    27   7.7  

>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +2

Query: 29  TWQDGVVDYREIVNGITSGTWQYFYDKVAQAPYVWNPTTGDLVTYDDARSVIEKGKYVRN 208
           T  +G ++Y +I   I     +  +D      Y +  T+  L+ YDD +SV+ K KY + 
Sbjct: 266 TSAEGSINYDQIKRLIVDHKARPVFDSTVVGDYCFAGTS--LIGYDDHQSVVAKVKYAKQ 323

Query: 209 NKLGGLFAWEIDADN 253
             L G F+W + AD+
Sbjct: 324 KGLLGYFSWHVGADD 338


>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 362

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = +2

Query: 38  DGVVDYREIVNGITSGTWQYFYDKVAQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKL 217
           DG + Y +I N I       F+D      Y +  TT   + YDD +S++ K +Y +   L
Sbjct: 274 DGSITYAKIRNYIIDNGAATFHDPAVIGFYCYVGTTW--IGYDDNQSIVSKVRYAKLKGL 331

Query: 218 GGLFAWEIDAD 250
            G F+W + AD
Sbjct: 332 LGYFSWHVGAD 342


>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 365

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = +2

Query: 38  DGVVDYREIVNGITSGTWQYFYDKVAQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKL 217
           DG + Y +I N I       F+D      Y +   T   + YDD +S++ K KY +   L
Sbjct: 284 DGSITYAKIRNYIVDNGAATFHDPAVIGFYCYVGNTW--IGYDDNQSIVYKVKYAKFTGL 341

Query: 218 GGLFAWEIDAD 250
            G F+W + AD
Sbjct: 342 LGYFSWHVGAD 352


>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +2

Query: 38  DGVVDYREIVNGITSGTWQYFYDKVAQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKL 217
           DG + Y +I   I        Y+      Y +  T  + + YDD +S++ K +Y +   L
Sbjct: 285 DGSIGYGQIRKFIVDNGATTVYNSTVVGDYCYAGT--NWIGYDDNQSIVTKVRYAKQRGL 342

Query: 218 GGLFAWEIDADNGDILN 268
            G F+W + AD+   L+
Sbjct: 343 LGYFSWHVGADDNSGLS 359


>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 398

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +2

Query: 38  DGVVDYREIVNGITSGTWQYFYDKVAQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKL 217
           DG + YR++   I        +D +    Y +  TT   + YD  +S++ K  Y +   L
Sbjct: 263 DGEISYRQLQTWIVDNGATKVHDDMMVGDYCYAGTTW--IGYDSEKSIVTKVIYAKQKGL 320

Query: 218 GGLFAWEIDADNGDILNA 271
            G F+W +  D+   L++
Sbjct: 321 LGYFSWHVGGDDNSELSS 338


>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 366

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +2

Query: 38  DGVVDYREIVNGITSGTWQYFYDKVAQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKL 217
           DG + Y +I   I        Y+      Y +   T   + YDD +S++ K KY +   L
Sbjct: 283 DGSIGYDQIRRFIVDNKATMVYNSNLVQNYCYAKKTW--IGYDDNQSIVMKVKYAKQRGL 340

Query: 218 GGLFAWEIDADNGDILN 268
            G F+W I AD+   L+
Sbjct: 341 LGYFSWHIGADDNSRLS 357


>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 261

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +2

Query: 38  DGVVDYREIVNGITSGTWQYFYDKVAQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKL 217
           DG + Y ++   I        +D +    Y +  TT   + YD   S++ K  Y +   L
Sbjct: 176 DGEISYSQLKTWIVDNKATTVHDNIVIGDYCYAGTTW--IGYDSEESIVTKVIYAKQKGL 233

Query: 218 GGLFAWEIDADNGDILNA 271
            G F+W++  D+   L++
Sbjct: 234 LGYFSWQVGGDDKSELSS 251


>At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2)
           identical to SUVH2 [Arabidopsis thaliana] GI:13517745;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH2 (SUVH2)  GI:13517744
          Length = 651

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -2

Query: 358 ITKFFDSDQLFESKSDKLTLSGIS*AHIHSVQDIAIVSVYFPSEQSTKLIVPHVFPLLNN 179
           I +F    +LF S    L + G+    ++ +   AIV+V  P +++ +LI P      N 
Sbjct: 61  IAEFIRISELFRSAFKPLQVKGLDGVSVYGLDSGAIVAV--PEKENRELIEPPPGFKDNR 118

Query: 178 *SCVIIS 158
            S V++S
Sbjct: 119 VSTVVVS 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,268,541
Number of Sequences: 28952
Number of extensions: 204123
Number of successful extensions: 437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)