Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   3.0  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   5.2  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   5.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   9.0  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   9.0  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 181  SKHEALKTNNNNIDHLLERGSDYTSEVRKVTPDGVDIVLDCL 306
            S+H  L   NN+ +H+LER     SE  K+  + +D  LD L
Sbjct: 1381 SQHRRLNLVNNHKEHVLERA---MSENNKMDNEAMDGFLDKL 1419


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 430 WQVDKVSPIKLFDENKSLAGLNL 498
           W V    P+K+FD + SL G  +
Sbjct: 130 WTVSGSDPVKMFDRHSSLNGTQI 152


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 157 TVFGVCSKSKHEALKTNNNNIDHLLER 237
           TV  + SKS+HE  +  N+ + +LL R
Sbjct: 543 TVESILSKSRHEEYRIANHIVAYLLSR 569


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 178  KSKHEALKTNNNNIDHL 228
            K+  EAL++  NNIDHL
Sbjct: 1038 KTLREALQSKTNNIDHL 1054


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 277 DGVDIVLDCLCGEECNRGYSLL 342
           +GV  + DCL G E   GYS +
Sbjct: 211 EGVSFLYDCLLGMEGKCGYSAI 232


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 382 IVTGETKSFFSAARAWWQVDKVSPIKLFDE-NKSLAGLNL 498
           IV  +  + ++  + WWQ+  ++ + L  +  K L+G ++
Sbjct: 198 IVRTDAAAIWATGQTWWQIPPIARVNLVGQLPKGLSGKDI 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,234
Number of Sequences: 5004
Number of extensions: 43458
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)