Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309E12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 117 7e-27
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 45 3e-05
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 31 0.44
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12) 31 0.76
SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_59081| Best HMM Match : TSP_1 (HMM E-Value=2.5) 28 5.4
SB_27025| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-28) 27 7.1
SB_19767| Best HMM Match : ADK (HMM E-Value=0.26) 27 7.1
SB_34049| Best HMM Match : PSI (HMM E-Value=2.6) 27 9.4
>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
Length = 562
Score = 117 bits (281), Expect = 7e-27
Identities = 66/173 (38%), Positives = 94/173 (54%), Gaps = 1/173 (0%)
Frame = +1
Query: 4 DAVAITTNYVVAYLLLFEMANLTPGKSLLVHSXXXXXXXXXXXXXKTVENVTVFGVCSKS 183
+ AI Y+ A+L+LF + NL KS+LVH K+VE VTVFG S++
Sbjct: 154 EGAAIPITYLTAHLILFHLGNLGLRKSVLVHMAAGGVGTAVTQICKSVEGVTVFGTASEN 213
Query: 184 KHEALKTNNNNIDHLLE-RGSDYTSEVRKVTPDGVDIVLDCLCGEECNRGYSLLKPMGRY 360
KHEA++ + H ++ R DY +VR+++PDGVD+VLD L G E R Y LLKPMG
Sbjct: 214 KHEAIQAQG--VTHPIDYRKEDYVKKVREISPDGVDLVLDPLGGSETKRCYDLLKPMGAL 271
Query: 361 ILYGSSNIVTGETKSFFSAARAWWQVDKVSPIKLFDENKSLAGLNLRHLLFQH 519
I YG++ E K F W+ P K+ +N ++ G ++ L QH
Sbjct: 272 IHYGNA----AENKGMFK----WFSGASFQPSKMMSDNATVCGFSILRLFNQH 316
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 45.2 bits (102), Expect = 3e-05
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Frame = +1
Query: 4 DAVAITTNYVVAYLLLFEMANLTPGKSLLVHSXXXXXXXXXXXXXKTVENVTVFGVCSKS 183
+A + T + A+ FE+A+ PG +LVHS K + GV +
Sbjct: 129 EAAGLPTVALTAWYAFFELAHTRPGAWVLVHSAAGGVGSMLVQMAK-IAGCHAVGVVG-A 186
Query: 184 KHEALKTNNNNIDHLLERGS-DYTSEVRKVTPDGVDIVLDCLCGEECNRGYSLLKPMGRY 360
H+ + DH++++ + D E + + PDG V D + Y+ L P G+
Sbjct: 187 GHKIDFVRSLGCDHVIDKSAQDLWQEAKVICPDGFSAVFDANGVATLKQSYAHLAPGGKL 246
Query: 361 ILYGSSNIVTGETKS 405
++Y + + GE ++
Sbjct: 247 VIYAA--VTLGEQEA 259
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 31.5 bits (68), Expect = 0.44
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Frame = +3
Query: 192 GAEDKQQ*HRPPAREGQRLHQRSQEGNSGWRRHCAGLSLRRGVQPRVFASEANGPLHPLW 371
G++ + +RPP +R H R + N+ R+H S RR + ++A L ++
Sbjct: 821 GSQSDNELNRPPQDRHRRHHHRRRHHNNKHRKHSREHSRRRHQRKHHKGNDAQETLEEIF 880
Query: 372 II*HRDRRDK--ELLQRCPCV---VASGQGVSDQTVRREQEPG 485
RD ++ E + + + S +S +T RE +PG
Sbjct: 881 EDDARDEKENVDEFVNGGGMMEHELQSDSQISQETGARENDPG 923
>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 30.7 bits (66), Expect = 0.76
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 1/111 (0%)
Frame = +1
Query: 28 YVVAYLLLFEMANLTPGKSLLVHSXXXXXXXXXXXXXKTVENVTVFGVCSKSKHEALKTN 207
Y AY L PG+++LVH + + V G SK E L
Sbjct: 385 YFTAYRALCHRLGAKPGETVLVHGASGGVGTAAVQIARAY-GMHVIGTAGSSKGEELVRQ 443
Query: 208 NNNIDHLLERGSDYTSEVRKVTP-DGVDIVLDCLCGEECNRGYSLLKPMGR 357
R +YT + + T G D++L+ L + L+ GR
Sbjct: 444 AGAHHVFNHRELNYTQGILEATDGQGPDVILEMLANVNLAKDLDLVSNGGR 494
>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
Length = 316
Score = 30.7 bits (66), Expect = 0.76
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 277 DGVDIVLDCLCGEECNRGYSLLKPMGRYILYG 372
+G+D++ DC+ G + L GR+ILYG
Sbjct: 181 EGMDLITDCVGGSYWQQNIKALATDGRWILYG 212
>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 166 GVC-SKSKHEALKTNNNNIDHLLERGSDYTSEVRKVTPDGVDIVLDCLCGEECNRGYSLL 342
G+C S+ K + +K + ++ + E+RK P G+D+ D + GE N L+
Sbjct: 190 GICGSEEKCQYIKELGFDSSINYKQVDNMAEELRKHCPQGIDVYFDNVGGEISNEIIRLM 249
Query: 343 KPMGRYILYG 372
I+ G
Sbjct: 250 NKNSHVIICG 259
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 378 R*SIEDVTAHWLQKRIPAVALLSAETIQHNVYAIRSYLPDFA-GVVAAP 235
R ++ED HW +PA A++ A V A++ + F G V P
Sbjct: 7 RSTLEDPRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55
>SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 220 RCYCCLSSAPRACFWSRHQTRSRFRP 143
RC+C L + R CF+SR++ R RP
Sbjct: 277 RCFCPLRTTXRKCFYSRNK-RHLLRP 301
>SB_59081| Best HMM Match : TSP_1 (HMM E-Value=2.5)
Length = 122
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 102 WGRCGTSCSPVGEDGRKRD 158
WG C C +GE R RD
Sbjct: 104 WGNCSHECGSIGEQHRHRD 122
>SB_27025| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-28)
Length = 675
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 359 TSSMDHLTS*PARQRASSALPVRGGKWTRCLRSNCSTRTRAW 484
TS + +S + AS LP+ GGK ++C + +T +W
Sbjct: 601 TSPQPYSSSSTLAKNASHGLPLVGGKNSKCTAFHNKLKTSSW 642
>SB_19767| Best HMM Match : ADK (HMM E-Value=0.26)
Length = 336
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -3
Query: 456 DRRHLVHLPPRTGSAEEALCLAGHDVR*SIEDVTAHWLQKRIPAVALLSAETIQH 292
+R HL++ PPR+ ++ L D + D TA + Q I +A E QH
Sbjct: 257 ERYHLIYNPPRSSEVKDRLQRNKKDQEDEVNDRTAQY-QAYIEEIAECYEEIGQH 310
>SB_34049| Best HMM Match : PSI (HMM E-Value=2.6)
Length = 279
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 304 LCGEECNRGYSLLKPMGRYILYGSSNIVT 390
+C E+C+ GY LL ++L G ++T
Sbjct: 116 MCVEKCSGGYCLLSSTSLWVLNGLLELIT 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,509,158
Number of Sequences: 59808
Number of extensions: 378509
Number of successful extensions: 1170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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