Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309E12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical pr... 33 0.16
AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical ... 30 0.87
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 2.0
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 2.7
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 2.7
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 2.7
AF067219-5|AAC17029.3| 241|Caenorhabditis elegans Hypothetical ... 28 3.5
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 28 4.7
AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical ... 28 4.7
U41034-8|AAA82382.1| 669|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 27 8.1
U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein. 27 8.1
U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated p... 27 8.1
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 8.1
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 8.1
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 8.1
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 8.1
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 8.1
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 8.1
>Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical
protein F39B2.3 protein.
Length = 328
Score = 32.7 bits (71), Expect = 0.16
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 2/126 (1%)
Frame = +1
Query: 4 DAVAITTNYVVAYLLLFEMANLTPGKSLLVH--SXXXXXXXXXXXXXKTVENVTVFGVCS 177
+ ++ Y+ AY LF +A G +LVH S + +E V G
Sbjct: 123 EGASLGVPYLTAYRALFHLAGAKTGDVILVHGASGGVGSALMQLAAWRNIEAVGTAGSAD 182
Query: 178 KSKHEALKTNNNNIDHLLERGSDYTSEVRKVTPDGVDIVLDCLCGEECNRGYSLLKPMGR 357
+ N +H Y S+++ P G + + + N LL P GR
Sbjct: 183 GIRFVKSLGARNVYNH---SDKQYVSKMKNDYPGGFNHIFEMAAHTNLNTDLGLLAPRGR 239
Query: 358 YILYGS 375
+ G+
Sbjct: 240 VAVIGN 245
>AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical
protein Y46E12BL.2 protein.
Length = 1334
Score = 30.3 bits (65), Expect = 0.87
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 360 VTAHWLQKRIPAVALLSAETIQHNVYAIRSYLPDFAGVVAAPLEQVVDVIVVCLQRLV 187
VTA+W+Q A L+A+ + +V LP F + A EQ+ V L R++
Sbjct: 386 VTAYWMQALAEAHVCLTAKDSKKSVQQAFQTLPLFVKIFEAGNEQLAQVTYQSLTRVI 443
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/131 (22%), Positives = 46/131 (35%), Gaps = 4/131 (3%)
Frame = +1
Query: 4 DAVAITTNYVVAYLLLFEMANLTPGKSLLVHSXXXXXXXXXXXXXKTVENVTVFGVCSKS 183
+A + Y AY L + G +L+H V S
Sbjct: 1707 EASTVPVVYTTAYYALVRRGLMKKGDKILIHGGAGGVGQAAIAIALAAGCEVFTTVGSAE 1766
Query: 184 KHEALKTNNNNID--HLLE-RGSDYTSEVRKVTPD-GVDIVLDCLCGEECNRGYSLLKPM 351
K E LK + H R +D+ +R+ T GV+IVL+ L E L
Sbjct: 1767 KREFLKNLFPQLQEHHFANSRSADFELHIRQHTKGRGVNIVLNSLANEMLQASLRCLARH 1826
Query: 352 GRYILYGSSNI 384
GR++ G ++
Sbjct: 1827 GRFLEIGKVDL 1837
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +1
Query: 154 VTVFGVCSKSKHEALKTNNNNIDHLLERGSDYTSEVRKV-TPDGVDIVLDCLCGEECNRG 330
+T + + ++L + +++D L+ + YT V + DG V+ G G
Sbjct: 1364 ITKLANVNMTSAQSLNSVLSSLDLALKGSTVYTLGVSSTKSKDGTYAVI---FGYVIASG 1420
Query: 331 YSLLKPMGRYILYGSSNIVTGETKSFF 411
Y+L+ P +YGS+ +TG+T++ +
Sbjct: 1421 YTLVSPRCTLSIYGSTIYLTGDTRASY 1447
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +1
Query: 154 VTVFGVCSKSKHEALKTNNNNIDHLLERGSDYTSEVRKV-TPDGVDIVLDCLCGEECNRG 330
+T + + ++L + +++D L+ + YT V + DG V+ G G
Sbjct: 1364 ITKLANVNMTSAQSLNSVLSSLDLALKGSTVYTLGVSSTKSKDGTYAVI---FGYVIASG 1420
Query: 331 YSLLKPMGRYILYGSSNIVTGETKSFF 411
Y+L+ P +YGS+ +TG+T++ +
Sbjct: 1421 YTLVSPRCTLSIYGSTIYLTGDTRASY 1447
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 196 LKTNNNNIDHLLERGSDYTSEVRKVT 273
L+ N+ IDHL + +D+TS+VR +T
Sbjct: 1260 LQAANDRIDHLTKTVNDHTSKVRDLT 1285
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 196 LKTNNNNIDHLLERGSDYTSEVRKVT 273
L+ N+ IDHL + +D+TS+VR +T
Sbjct: 1333 LQAANDRIDHLTKTVNDHTSKVRDLT 1358
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 196 LKTNNNNIDHLLERGSDYTSEVRKVT 273
L+ N+ IDHL + +D+TS+VR +T
Sbjct: 1333 LQAANDRIDHLTKTVNDHTSKVRDLT 1358
>AF067219-5|AAC17029.3| 241|Caenorhabditis elegans Hypothetical
protein R12E2.8 protein.
Length = 241
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 370 HRGCNGPLASEANTRGCTPLRRDN 299
H C+GPL + R C LRR+N
Sbjct: 187 HVCCDGPLEKASTVRACCYLRREN 210
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 301 NPAQCLRHPELPS*LRWCSRCPSRAGGRCYCCLS 200
N C + E P+ WC + +GG CCLS
Sbjct: 699 NAESCTKDEECPTSTHWCHKLGLASGG--MCCLS 730
>AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical
protein F36H9.1 protein.
Length = 471
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 295 LDCLCGEE-CNRGYSLLKPMGRYILYGSSNIVTGETK 402
L C+C E CNR ++ P+G I Y S + TK
Sbjct: 376 LQCICDTEFCNREQNIEVPLGNVICYLSKRDQSERTK 412
>U41034-8|AAA82382.1| 669|Caenorhabditis elegans Hypothetical
protein M02D8.5 protein.
Length = 669
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 325 RGYSLLKPMGRYILYGSSNIVTGETKSFFSAARAWWQVDKVSPIKLFDENKSLAGLNL 498
RGYSL +Y S + + F++A ++W VSP+ + +KSL L
Sbjct: 341 RGYSLNNETDSLTVYDSYQHIVVQMMPFYAAFTSFWAT--VSPVNVQFISKSLTAFPL 396
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +3
Query: 276 GWRRHCAGLSLRRGVQPRVFAS---EANGPLHPLWII*HRDRRDKELLQRCPCVVASGQG 446
GW++ L V R F S + + ++P + +++ RDK CV AS
Sbjct: 114 GWKKEKHSLRRVLVVLQRSFYSYDVDTDKCINPEASVLYKEHRDKFREIAKECVEASRSM 173
Query: 447 VSDQTVRREQEPGGL 491
V D+ +E +P G+
Sbjct: 174 VYDELAEQEHDPNGI 188
>U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin
protein.
Length = 777
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 17 SPRTTWWPICCSSRWLT 67
SP TW IC SSRW T
Sbjct: 2 SPLLTWNLICVSSRWYT 18
>U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated
protein 8 protein.
Length = 777
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 17 SPRTTWWPICCSSRWLT 67
SP TW IC SSRW T
Sbjct: 2 SPLLTWNLICVSSRWYT 18
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.1 bits (57), Expect = 8.1
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = -3
Query: 465 EQFDRRHLVHLPPRTGSAEEALCLAGHDVR*SI--EDVTAHW--LQKRIPAVALLSAETI 298
+QFDR++ + R +A E + + H R S E +T+ + + + +E+
Sbjct: 7 KQFDRKYSSY---RKFTATEDVNYSTHSSRSSYRSESLTSRTDGRGRSTSSEIIAGSESR 63
Query: 297 QHNVY-AIRSYLPDFAGVVAAPLE--QVVDVI 211
+ VY AI+ Y PD V A PLE Q+V+V+
Sbjct: 64 SYPVYIAIQDYTPDKEDVEAIPLEQGQIVEVL 95
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.1 bits (57), Expect = 8.1
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = -3
Query: 465 EQFDRRHLVHLPPRTGSAEEALCLAGHDVR*SI--EDVTAHW--LQKRIPAVALLSAETI 298
+QFDR++ + R +A E + + H R S E +T+ + + + +E+
Sbjct: 7 KQFDRKYSSY---RKFTATEDVNYSTHSSRSSYRSESLTSRTDGRGRSTSSEIIAGSESR 63
Query: 297 QHNVY-AIRSYLPDFAGVVAAPLE--QVVDVI 211
+ VY AI+ Y PD V A PLE Q+V+V+
Sbjct: 64 SYPVYIAIQDYTPDKEDVEAIPLEQGQIVEVL 95
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.1 bits (57), Expect = 8.1
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = -3
Query: 465 EQFDRRHLVHLPPRTGSAEEALCLAGHDVR*SI--EDVTAHW--LQKRIPAVALLSAETI 298
+QFDR++ + R +A E + + H R S E +T+ + + + +E+
Sbjct: 7 KQFDRKYSSY---RKFTATEDVNYSTHSSRSSYRSESLTSRTDGRGRSTSSEIIAGSESR 63
Query: 297 QHNVY-AIRSYLPDFAGVVAAPLE--QVVDVI 211
+ VY AI+ Y PD V A PLE Q+V+V+
Sbjct: 64 SYPVYIAIQDYTPDKEDVEAIPLEQGQIVEVL 95
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.1 bits (57), Expect = 8.1
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = -3
Query: 465 EQFDRRHLVHLPPRTGSAEEALCLAGHDVR*SI--EDVTAHW--LQKRIPAVALLSAETI 298
+QFDR++ + R +A E + + H R S E +T+ + + + +E+
Sbjct: 7 KQFDRKYSSY---RKFTATEDVNYSTHSSRSSYRSESLTSRTDGRGRSTSSEIIAGSESR 63
Query: 297 QHNVY-AIRSYLPDFAGVVAAPLE--QVVDVI 211
+ VY AI+ Y PD V A PLE Q+V+V+
Sbjct: 64 SYPVYIAIQDYTPDKEDVEAIPLEQGQIVEVL 95
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.1 bits (57), Expect = 8.1
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = -3
Query: 465 EQFDRRHLVHLPPRTGSAEEALCLAGHDVR*SI--EDVTAHW--LQKRIPAVALLSAETI 298
+QFDR++ + R +A E + + H R S E +T+ + + + +E+
Sbjct: 7 KQFDRKYSSY---RKFTATEDVNYSTHSSRSSYRSESLTSRTDGRGRSTSSEIIAGSESR 63
Query: 297 QHNVY-AIRSYLPDFAGVVAAPLE--QVVDVI 211
+ VY AI+ Y PD V A PLE Q+V+V+
Sbjct: 64 SYPVYIAIQDYTPDKEDVEAIPLEQGQIVEVL 95
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.1 bits (57), Expect = 8.1
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = -3
Query: 465 EQFDRRHLVHLPPRTGSAEEALCLAGHDVR*SI--EDVTAHW--LQKRIPAVALLSAETI 298
+QFDR++ + R +A E + + H R S E +T+ + + + +E+
Sbjct: 7 KQFDRKYSSY---RKFTATEDVNYSTHSSRSSYRSESLTSRTDGRGRSTSSEIIAGSESR 63
Query: 297 QHNVY-AIRSYLPDFAGVVAAPLE--QVVDVI 211
+ VY AI+ Y PD V A PLE Q+V+V+
Sbjct: 64 SYPVYIAIQDYTPDKEDVEAIPLEQGQIVEVL 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,436,171
Number of Sequences: 27780
Number of extensions: 263401
Number of successful extensions: 893
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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