Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 249  VVAAPLEQVVDVIVVCLQR 193
            VVAA L  +V VIV+C+ R
Sbjct: 1591 VVAAILVIIVAVIVICVLR 1609


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 374 HLTS*PARQRASSALPVRGGKWTRCLRSNCSTRTRA 481
           HLTS PAR  +S A   +  +    L S  ST  R+
Sbjct: 674 HLTSPPARSPSSQAQASQCPQTASLLSSTHSTLARS 709


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 419 PVRGGKWT 442
           P+RGG+WT
Sbjct: 380 PIRGGEWT 387


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 223 GRCYCCLSSAP 191
           G CY C+S AP
Sbjct: 321 GDCYYCISGAP 331


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 151  FRPSSPTGLQLVPHRPQRNARVD 83
            +R  S +G + VP RP+R   VD
Sbjct: 1354 YRGPSASGGRPVPERPERVPTVD 1376


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 5   MLLPSPRTTWW 37
           ML PSP+T W+
Sbjct: 201 MLEPSPKTPWY 211


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 51  EQQIGHHVVR 22
           E+QIGHH+++
Sbjct: 196 ERQIGHHLIQ 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,913
Number of Sequences: 438
Number of extensions: 2911
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)