Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E11f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    26   0.23 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   2.9  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   8.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -3

Query: 459 FITRCYSFTVEVNREHLLSTYFIRKIGTRLRFEHRCI 349
           F+T+   F V++  + L+  Y  +K G+++    +C+
Sbjct: 749 FMTKLLEFDVKLQSDRLMIDYKTQKTGSKIHLFVKCV 785


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
          protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 8  GSRLSGRPSCMTTGRW 55
          G R + RP  +TT RW
Sbjct: 40 GRRRAARPGVVTTPRW 55


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 61  LRPPTCRHAARSPT 20
           L  PTC  A+ SPT
Sbjct: 191 LPTPTCSEASSSPT 204


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 411 LLSTYFIRKIGTRLRFEHRCI 349
           L+  Y I ++GT +R   +C+
Sbjct: 125 LIFAYLIPEVGTWIRAVRKCL 145


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 411 LLSTYFIRKIGTRLRFEHRCI 349
           L+  Y I ++GT +R   +C+
Sbjct: 125 LIFAYLIPEVGTWIRAVRKCL 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,428
Number of Sequences: 336
Number of extensions: 2220
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)