Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    29   0.56 
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   6.8  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   6.8  
SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    25   6.8  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 389 LMKYVLNKCSRLTSTVKE*HRVIKNATRKIIICVITGGRT 508
           +MK + + C+R  S V       K+A +K+++C+I+ GRT
Sbjct: 211 VMKNISHLCTRKNSQVWG-----KDAWKKVVVCIISDGRT 245


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 356 GASLNTNASGVLSVRPRRLQC*QHSRLEP---RDLNYTSRTS*NSLSRHMY 213
           GAS N NAS   S  P        SR +P   R  NY+SR S     R+ Y
Sbjct: 294 GASTNYNASRPPSNHPHSSNYPSSSRRKPSPDRYSNYSSRGSGGRYRRNRY 344


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 139 SEHNRSGTAEERNSALTLHRGNVRTRLRPPTCRHAARSPTQPRT 8
           SE + S + E     +  H   +  R   P+C +A+ SP  P T
Sbjct: 277 SEQSNSDSPELSADKVLSHCSPIDARPSTPSCPNASISPKTPNT 320


>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 286 TPGLSPVISTIRQGQAEIV-SQGICISIGRQIRNIQPPDPHVLSVQR 149
           T   +P   T+R  Q E     GI  S+G ++  +  P+PH+L  +R
Sbjct: 53  TDYFNPETGTLRILQEEEWRGLGITQSLGWEMYEVHVPEPHILLFKR 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,774
Number of Sequences: 5004
Number of extensions: 37405
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)