Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0363 - 28297295-28298167                                         33   0.14 
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420...    31   0.74 
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488...    28   5.2  
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345...    27   6.9  
11_06_0313 + 22306497-22308938                                         27   9.1  
05_04_0235 + 19291204-19291769,19291860-19292250                       27   9.1  
03_02_0118 - 5722988-5723329                                           27   9.1  

>02_05_0363 - 28297295-28298167
          Length = 290

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = -2

Query: 286 TPGLSPVISTIRQGQAEIVSQGICISIGRQIRNIQPPDPHVLSVQRHASSEHNRSGTA 113
           TP      ST+  G A  +S  +  S GR+ R+  PPDP   S +   S  HN S  A
Sbjct: 216 TPCRRRQTSTMPSGFAVCLSPLVRPSPGRRHRHAHPPDPGTFSCELRPSPLHNLSSAA 273


>04_04_1076 -
           30639835-30640898,30641613-30641915,30642008-30642068,
           30643076-30644380
          Length = 910

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 145 ASSEHNRSGTAEERNSALTLH--RGNVRTRLRPPTCRHAAR 29
           ASS H  SG+ EER  +   H   G +      P+CRH +R
Sbjct: 600 ASSSHGSSGSVEERPYSSGRHGSSGRMEEGTAAPSCRHRSR 640


>05_01_0558 -
           4880811-4880996,4881098-4881178,4881247-4881393,
           4881985-4882029,4882370-4883134
          Length = 407

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 181 PPDPHVLSVQRHASSEHNRSGTA 113
           PP+PH L+ + H++S  +R+ TA
Sbjct: 47  PPEPHRLTYRTHSTSSSSRTPTA 69


>01_01_0469 -
           3456067-3456123,3456414-3456565,3456649-3456779,
           3456846-3458036,3458460-3458541,3458947-3458984,
           3459091-3459250,3459356-3459557,3460245-3460329,
           3460809-3460863,3461230-3461325,3461807-3461940,
           3462031-3462043,3462315-3462419,3462935-3463121
          Length = 895

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 388 KNWYPPEIRTSVHRSTRMHRASYPLGHDDFSVSS 287
           K+ Y PE RTS   +TR   +     HD FS  S
Sbjct: 338 KDRYSPEQRTSTRTNTRFETSGITATHDLFSDQS 371


>11_06_0313 + 22306497-22308938
          Length = 813

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 28/94 (29%), Positives = 37/94 (39%)
 Frame = -2

Query: 304 DFSVSSTPGLSPVISTIRQGQAEIVSQGICISIGRQIRNIQPPDPHVLSVQRHASSEHNR 125
           D  V STP    V ST+ Q  A  V++ +    GR  R     D     +Q    S++N 
Sbjct: 178 DVPVLSTPSAPQVDSTVFQTPASAVNESVTRKRGRPRRVQDGADTSAPPIQ----SKYNE 233

Query: 124 SGTAEERNSALTLHRGNVRTRLRPPTCRHAARSP 23
                +  SA+TL     R R RP      A  P
Sbjct: 234 --PVLQTPSAVTLPEDGKRKRGRPKRVPDGALIP 265


>05_04_0235 + 19291204-19291769,19291860-19292250
          Length = 318

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +2

Query: 20  SGRPSC--MTTGRWSESSSDIAS 82
           S +PSC  + TG+W+ SS DIA+
Sbjct: 231 SPKPSCHDVITGQWTPSSGDIAA 253


>03_02_0118 - 5722988-5723329
          Length = 113

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 196 IRNIQPPDPHVLSVQRHASSEHNRSGTAEERNSALTLHR 80
           I+NI   DPH+  + R A +E+NR   ++E    LT HR
Sbjct: 26  IKNID--DPHIQELGRWAITENNRVSPSDE----LTFHR 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,384
Number of Sequences: 37544
Number of extensions: 263513
Number of successful extensions: 768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)