Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309E11f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26) 33 0.14
SB_40868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19) 30 1.0
SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_38060| Best HMM Match : ITAM (HMM E-Value=1.3) 28 5.4
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 28 5.4
SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2) 27 7.1
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 27 9.4
SB_9322| Best HMM Match : RGS (HMM E-Value=0.037) 27 9.4
>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
Length = 1362
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 376 PPEIRTSVHRSTRMHRASYPLGHDDFSVSSTPGLSPVISTIR 251
P E+ +T+ ++ PL HDD ++ + PG PV+ R
Sbjct: 628 PSEVAAIAEAATKSAVSTQPLSHDDITLETNPGRKPVLRHTR 669
>SB_40868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 30.7 bits (66), Expect = 0.76
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 99 ELRSSAVPDLLCSDDAWRCTDSTWGS 176
EL + +PD+L +D W DS WGS
Sbjct: 9 ELVNKYMPDILWADGDWEAKDSYWGS 34
>SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)
Length = 672
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 60 SRVLTLPRWSVSAELRSSAVPDLLCSDDAWRCTDSTWGSGG*IFRICLPMLIHMP 224
SRVLT WS+ +E A LL +AW+ + G + P L++ P
Sbjct: 150 SRVLTEEDWSIESECFPYAKSKLLAEKEAWKLVEGLQGDEKFELVVINPGLVYGP 204
>SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 154 QRHASSEHNRSGTAEERNSALTL----HRGNVRTRLRPPTCRHAARSPTQ 17
++HA + NR T +A T +RGN R+R R +AR P Q
Sbjct: 144 RQHAQAPDNRGNTHRREITAATRTGPDNRGNTRSRQATAATRSSARQPRQ 193
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 427 FHGEGITSCNKKCYP 471
+ G+G T+CNK CYP
Sbjct: 67 YTGDGKTACNKTCYP 81
>SB_38060| Best HMM Match : ITAM (HMM E-Value=1.3)
Length = 401
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 78 PRWSVSAELRSSAVPDLLCSDDAWRCTDST 167
P +S S+ELR++A C+DD + C D +
Sbjct: 345 PVYSESSELRTTANKTFPCNDDDYVCMDGS 374
>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 828
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = -2
Query: 214 ISIGRQIRNIQPPDPHVLSVQRHASSEHNRSGTAEERNSALTLHRGNVRTRLRPPTCRHA 35
+S+G ++N P P S ++SGT +S ++ G RTR + RH
Sbjct: 77 LSVG-MLKN-PSPTPVTSRPASSRSGYSSKSGTKSIHSSPTAMYLGFQRTRCKSAPPRHF 134
Query: 34 ARSPTQPRT 8
P +P+T
Sbjct: 135 RYVPKRPQT 143
>SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2)
Length = 368
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 349 RSTRMHRASYPLGHDDFSVSSTPGLSPVISTIRQGQAEIVSQG 221
R R+H+ S+ LGH+D S S G + S +IV+ G
Sbjct: 16 RFKRIHQVSHELGHEDSSSGSDSGYLELTSK-HLSHVKIVTSG 57
>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 112 EERNSALTLHRGNVRTRLRPPTCRHAARSPTQPRTR 5
E + L RG VR RLRP + RH P P+T+
Sbjct: 549 EPYSRGLQFGRGRVRVRLRPASPRH---GPCVPQTQ 581
>SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1432
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 76 NVRTRLRPPTCRHAARSPTQPRTR 5
N+R + PP H RSP +PR +
Sbjct: 1389 NLRANVTPPGASHPRRSPGRPRKK 1412
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 100 SALTLHRGNVRTRLRPPTCRHAARSPTQPRTR 5
SAL R + RTR P T R+ R+P PRTR
Sbjct: 692 SALYRTRNDPRTRNDPRT-RNDPRTPNDPRTR 722
>SB_9322| Best HMM Match : RGS (HMM E-Value=0.037)
Length = 1068
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 2 VSGSRLSGRPSCMTTGRWSESSSDIASMERKRRV-TFLSSARSIVLGRRVA 151
VSG++ G TTGRW + + ER RR+ T L+ A I R ++
Sbjct: 610 VSGAKDLGHYYSPTTGRWVKRHPGSSPSERGRRLYTSLAMAEEIDADRSLS 660
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,699,736
Number of Sequences: 59808
Number of extensions: 301042
Number of successful extensions: 962
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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