Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    34   0.071
Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z54327-7|CAD57690.1|  268|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U08102-1|AAB65852.1|  417|Caenorhabditis elegans putative RNA he...    27   6.2  
Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
            C38D4.3 protein.
          Length = 1784

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 373  PEIRTSVHRSTRMHRASYPLGHDD-FSVSSTPGLSPVISTIRQGQAEIVSQGICISIGRQ 197
            PE+  SV+  T   R S   G DD  SVSS+  + P    I+Q ++ + S    ++    
Sbjct: 954  PEVFASVNDKTERKRKSSQFGEDDESSVSSSQYVPPTAKRIQQWKSAVES----VANNSS 1009

Query: 196  IRNIQPPDPH 167
            I +I  PD H
Sbjct: 1010 INSITSPDSH 1019


>Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical
           protein F38H4.4 protein.
          Length = 501

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = -2

Query: 184 QPPDPHVLSVQRHASSEHNRSGTAEERNSALTLHRGNVRTRLRPPTCRHAARSPTQPRTR 5
           Q P PH     +H   +H+R   + ++ +     RG  R + R    +  + +  QPR++
Sbjct: 17  QTPTPHKKKHAKHHGGKHHRKSRSGKKKTGFLCCRGKKRRKSRKGHGKSKSTAHKQPRSK 76


>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
           protein C49C3.4 protein.
          Length = 1566

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 358 SVHRSTRMHRASYPLGHDDFSVSSTPGLSPVISTIRQGQAEIVS 227
           ++ +    H  +YP G+D++++  T G +P +  I Q Q + +S
Sbjct: 103 NIQKGLEAHFDAYPTGYDNYNLVETRG-TPYLDNIDQPQYDSIS 145


>Z54327-7|CAD57690.1|  268|Caenorhabditis elegans Hypothetical
           protein C26D10.2b protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 420 REHLLSTYFIRKIGTRLRFEHRCIAQHECIGRLI 319
           R+ LL    +R IG    FEH    QHECI + I
Sbjct: 44  RDFLLKPEILRAIGD-CGFEHPSEVQHECIPQAI 76


>Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical
           protein C26D10.2a protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 420 REHLLSTYFIRKIGTRLRFEHRCIAQHECIGRLI 319
           R+ LL    +R IG    FEH    QHECI + I
Sbjct: 44  RDFLLKPEILRAIGD-CGFEHPSEVQHECIPQAI 76


>U08102-1|AAB65852.1|  417|Caenorhabditis elegans putative RNA
           helicase protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 420 REHLLSTYFIRKIGTRLRFEHRCIAQHECIGRLI 319
           R+ LL    +R IG    FEH    QHECI + I
Sbjct: 43  RDFLLKPEILRAIGD-CGFEHPSEVQHECIPQAI 75


>Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical
           protein R03G8.6 protein.
          Length = 747

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 391 NEIRTQQMFTIDFHGEGITSCNKKCYPQNYNLR 489
           N+I   ++F      +  +SC +K  PQN NLR
Sbjct: 656 NQIENFELFPKCVQSQTFSSCYQKRIPQNINLR 688


>U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical
           protein F30H5.5 protein.
          Length = 133

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 325 TPDAFVL--SDAPMFESQAGTNFSNEIRTQQMFTIDFHGEGI 444
           T DA +L  ++A +   Q  T   NE  T+Q+FT+D++   I
Sbjct: 23  TSDAEILEITNAHIKAIQVATRSMNETATRQLFTLDYNNPKI 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,426,584
Number of Sequences: 27780
Number of extensions: 218943
Number of successful extensions: 683
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)