BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS309E11f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g60300.2 68418.m07558 lectin protein kinase family protein co... 29 1.9 At5g60300.1 68418.m07557 lectin protein kinase family protein co... 29 1.9 At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n... 27 5.8 At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 27 5.8 At3g11590.1 68416.m01416 expressed protein 27 7.7 At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 27 7.7 >At5g60300.2 68418.m07558 lectin protein kinase family protein contains Pfam domains, PF00069: Protein kinase domain and PF00139: Legume lectins beta domain Length = 718 Score = 29.1 bits (62), Expect = 1.9 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 48 VGGLSRVLTLPRWSVSAELRSSAVPDLLCSDDAWRCTDSTWG 173 V S V++ WS+S SS+ P+ S AW+ TD WG Sbjct: 636 VDASSLVVSSASWSLSGPSMSSSSPNH--SPYAWQSTDQPWG 675 >At5g60300.1 68418.m07557 lectin protein kinase family protein contains Pfam domains, PF00069: Protein kinase domain and PF00139: Legume lectins beta domain Length = 718 Score = 29.1 bits (62), Expect = 1.9 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 48 VGGLSRVLTLPRWSVSAELRSSAVPDLLCSDDAWRCTDSTWG 173 V S V++ WS+S SS+ P+ S AW+ TD WG Sbjct: 636 VDASSLVVSSASWSLSGPSMSSSSPNH--SPYAWQSTDQPWG 675 >At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) nearly identical to retinoblastoma-related protein [Arabidopsis thaliana] GI:8777927; contains Pfam profiles: PF01858 retinoblastoma-associated protein A domain, PF01857 retinoblastoma-associated protein B domain Length = 1013 Score = 27.5 bits (58), Expect = 5.8 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -2 Query: 79 GNVRTRLRPPTCRHAARSPTQP 14 GNV++++ PP + A SPT+P Sbjct: 695 GNVKSKMLPPPLQSAFASPTRP 716 >At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative similar to DEIH-box RNA/DNA helicase [Arabidopsis thaliana] GI:5881579; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain Length = 1299 Score = 27.5 bits (58), Expect = 5.8 Identities = 19/66 (28%), Positives = 31/66 (46%) Frame = -2 Query: 346 STRMHRASYPLGHDDFSVSSTPGLSPVISTIRQGQAEIVSQGICISIGRQIRNIQPPDPH 167 S RM SY +++ S + +S + RQG+A GIC + ++R PD Sbjct: 633 SGRMKEKSYD-PYNNVSTLQSSWVSKANAKQRQGRAGRCQPGICYHLYSRLRAASMPDFK 691 Query: 166 VLSVQR 149 V ++R Sbjct: 692 VPEIKR 697 >At3g11590.1 68416.m01416 expressed protein Length = 622 Score = 27.1 bits (57), Expect = 7.7 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = -2 Query: 112 EERNSALTLHRGNVRTRLRPPTCRHAARSPTQ 17 EE+N+A+ R ++T L+ C+ R P Q Sbjct: 425 EEKNAAVDKLRNQLQTYLKAKRCKEKTREPPQ 456 >At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family protein Length = 660 Score = 27.1 bits (57), Expect = 7.7 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Frame = -2 Query: 376 PPEIRTSVHRSTRMHRASYPLGHDDFSVSSTPGLSPVISTIRQGQAEIVSQGICISIGRQ 197 PP R SV + M+ + P + ++ P LS + Q +SQ + Q Sbjct: 331 PP--RPSVTAAEPMNSTAPPRPSVTAAEATPPNLSAPLPHCNTPQPSPISQQAAVESNTQ 388 Query: 196 IRNIQPPDPHVLSVQRHASSEH-NRSGTAEERNSALTLHRGNV-RTRLRPPTCRHAARSP 23 +++ P P V + R H N S AL N+ T L P+ AR Sbjct: 389 MQSTALPRPSVTAEARPLHQPHSNTSQPRPIPQQALAQSNTNITSTALPRPSITAEARLL 448 Query: 22 TQPRT 8 QP + Sbjct: 449 HQPHS 453 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,665,229 Number of Sequences: 28952 Number of extensions: 200081 Number of successful extensions: 613 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 602 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 613 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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