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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60300.2 68418.m07558 lectin protein kinase family protein co...    29   1.9  
At5g60300.1 68418.m07557 lectin protein kinase family protein co...    29   1.9  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    27   5.8  
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim...    27   5.8  
At3g11590.1 68416.m01416 expressed protein                             27   7.7  
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family...    27   7.7  

>At5g60300.2 68418.m07558 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain
           and PF00139: Legume lectins beta domain
          Length = 718

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 48  VGGLSRVLTLPRWSVSAELRSSAVPDLLCSDDAWRCTDSTWG 173
           V   S V++   WS+S    SS+ P+   S  AW+ TD  WG
Sbjct: 636 VDASSLVVSSASWSLSGPSMSSSSPNH--SPYAWQSTDQPWG 675


>At5g60300.1 68418.m07557 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain
           and PF00139: Legume lectins beta domain
          Length = 718

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 48  VGGLSRVLTLPRWSVSAELRSSAVPDLLCSDDAWRCTDSTWG 173
           V   S V++   WS+S    SS+ P+   S  AW+ TD  WG
Sbjct: 636 VDASSLVVSSASWSLSGPSMSSSSPNH--SPYAWQSTDQPWG 675


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
           nearly identical to retinoblastoma-related protein
           [Arabidopsis thaliana] GI:8777927; contains Pfam
           profiles: PF01858 retinoblastoma-associated protein A
           domain, PF01857 retinoblastoma-associated protein B
           domain
          Length = 1013

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 79  GNVRTRLRPPTCRHAARSPTQP 14
           GNV++++ PP  + A  SPT+P
Sbjct: 695 GNVKSKMLPPPLQSAFASPTRP 716


>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
           similar to DEIH-box RNA/DNA helicase [Arabidopsis
           thaliana] GI:5881579; contains Pfam profiles PF04408:
           Helicase associated domain (HA2), PF00271: Helicase
           conserved C-terminal domain
          Length = 1299

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -2

Query: 346 STRMHRASYPLGHDDFSVSSTPGLSPVISTIRQGQAEIVSQGICISIGRQIRNIQPPDPH 167
           S RM   SY   +++ S   +  +S   +  RQG+A     GIC  +  ++R    PD  
Sbjct: 633 SGRMKEKSYD-PYNNVSTLQSSWVSKANAKQRQGRAGRCQPGICYHLYSRLRAASMPDFK 691

Query: 166 VLSVQR 149
           V  ++R
Sbjct: 692 VPEIKR 697


>At3g11590.1 68416.m01416 expressed protein
          Length = 622

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 112 EERNSALTLHRGNVRTRLRPPTCRHAARSPTQ 17
           EE+N+A+   R  ++T L+   C+   R P Q
Sbjct: 425 EEKNAAVDKLRNQLQTYLKAKRCKEKTREPPQ 456


>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
           protein 
          Length = 660

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
 Frame = -2

Query: 376 PPEIRTSVHRSTRMHRASYPLGHDDFSVSSTPGLSPVISTIRQGQAEIVSQGICISIGRQ 197
           PP  R SV  +  M+  + P      + ++ P LS  +      Q   +SQ   +    Q
Sbjct: 331 PP--RPSVTAAEPMNSTAPPRPSVTAAEATPPNLSAPLPHCNTPQPSPISQQAAVESNTQ 388

Query: 196 IRNIQPPDPHVLSVQRHASSEH-NRSGTAEERNSALTLHRGNV-RTRLRPPTCRHAARSP 23
           +++   P P V +  R     H N S        AL     N+  T L  P+    AR  
Sbjct: 389 MQSTALPRPSVTAEARPLHQPHSNTSQPRPIPQQALAQSNTNITSTALPRPSITAEARLL 448

Query: 22  TQPRT 8
            QP +
Sbjct: 449 HQPHS 453


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,665,229
Number of Sequences: 28952
Number of extensions: 200081
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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