Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   178   4e-46
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   178   4e-46
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   1.7  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   6.8  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.0  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   9.0  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  178 bits (434), Expect = 4e-46
 Identities = 85/166 (51%), Positives = 107/166 (64%)
 Frame = +2

Query: 23  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPXYRLIVRLSNKDV 202
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN P YRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 203 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 382
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                  
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 383 XXXXXXXDEYNVEPVDXGPGAFRCYLDVGLARTTTGGXRVFGAMXG 520
                  +    E ++ GP  F+ +LDVGL RT+TG  RVFGAM G
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGS-RVFGAMKG 165


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  178 bits (434), Expect = 4e-46
 Identities = 85/166 (51%), Positives = 107/166 (64%)
 Frame = +2

Query: 23  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPXYRLIVRLSNKDV 202
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN P YRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 203 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 382
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                  
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 383 XXXXXXXDEYNVEPVDXGPGAFRCYLDVGLARTTTGGXRVFGAMXG 520
                  +    E ++ GP  F+ +LDVGL RT+TG  RVFGAM G
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGS-RVFGAMKG 165


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 353 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 261
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 191 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 313
           N+D      + +   D  VC +++  +  YG + G  +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 384  AQXMSQVMNTMLNLSTMDQEHLDVI 458
            AQ ++  +  + NL  MD++H+DV+
Sbjct: 991  AQGLTDFLIVVSNLLEMDEKHVDVV 1015


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 172  TIXRCVIFVLVLNNEAFTSII--ISFPFTTPLEFYLVPLEVLFVLHNFNE 29
            T+     F L LN + F+ ++  + FPF +P++      E+  +LHN  +
Sbjct: 1129 TLQTTYSFELTLNYD-FSELLTKVVFPFLSPVDTITAEQEMRDLLHNIRQ 1177


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 38  VVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYN 157
           + K +    +YQ   K + E  T  Y RK+ +++ + K N
Sbjct: 485 IEKEEGELTKYQTLVKSKTEILTQLYTRKKQLLEQQGKGN 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,154
Number of Sequences: 5004
Number of extensions: 36660
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)