Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309E10f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 117 6e-44
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 126 1e-29
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 5.4
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.1
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 7.1
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 27 7.1
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.1
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.1
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 27 7.1
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.1
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.1
SB_57657| Best HMM Match : PHD (HMM E-Value=0.0012) 27 9.4
SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_40061| Best HMM Match : PHD (HMM E-Value=0.015) 27 9.4
SB_6963| Best HMM Match : PHD (HMM E-Value=0.054) 27 9.4
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 117 bits (281), Expect(2) = 6e-44
Identities = 55/104 (52%), Positives = 69/104 (66%)
Frame = +2
Query: 209 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 388
++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG
Sbjct: 95 RIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGT 154
Query: 389 XXXXXDEYNVEPVDXGPGAFRCYLDVGLARTTTGGXRVFGAMXG 520
DEYNVE VD PGAFRC+LDVGLART+TG RVFGA+ G
Sbjct: 155 DDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGA-RVFGALKG 197
Score = 78.2 bits (184), Expect(2) = 6e-44
Identities = 31/42 (73%), Positives = 37/42 (88%)
Frame = +2
Query: 86 RRREGKTDYYARKRLVVQDKNKYNTPXYRLIVRLSNKDVTCQ 211
RR +GKTDYYARKRL+ QDKNKYNTP YR +VR++NKD+ CQ
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 126 bits (303), Expect = 1e-29
Identities = 60/103 (58%), Positives = 70/103 (67%)
Frame = +2
Query: 212 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 391
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 392 XXXXDEYNVEPVDXGPGAFRCYLDVGLARTTTGGXRVFGAMXG 520
DEYNVE +D PGAFRC+LDVGLART+TG RVFGA+ G
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGA-RVFGALKG 102
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 173 LIVRLSNKDVTCQVAYSRIEGD-HIVC 250
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 221 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 319
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 41 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 136
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 26 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 112
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 179 VRLSNKDVTCQVAYSRIEGDHIVCAAY 259
VRL ++D TC +YS I + +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 247 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 363
V+C + +C+ W CCSI N S + +S +W
Sbjct: 91 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 129
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 247 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 363
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 142
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 247 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 363
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 247 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 363
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 247 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 363
V+C + +C+ W CCSI N S + +S +W
Sbjct: 359 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 397
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 247 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 363
V+C + +C+ W CCSI N S + +S +W
Sbjct: 645 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 683
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 247 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 363
V+C + +C+ W CCSI N S + +S +W
Sbjct: 184 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 222
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 179 VRLSNKDVTCQVAYSRIEGDHIVCAAY 259
VRL ++D TC +YS I + +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 247 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 363
V+C + +C+ W CCSI N S + +S +W
Sbjct: 23 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 61
>SB_57657| Best HMM Match : PHD (HMM E-Value=0.0012)
Length = 363
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 247 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 363
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTNCCSISNESYNTLANSSCSW 98
>SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Frame = +2
Query: 29 FVKVVKNKQYFKRYQVKFKRRREGKT----DYYARKRLVVQDKN--KYNTPXYRLIVRLS 190
F K K Y + Q + + R EGK+ D KR ++ N + Y LS
Sbjct: 43 FGKHFKGSLYIESTQRQKEERTEGKSAKHKDERVGKRCILNGLNVPQCKNSIYVNYELLS 102
Query: 191 NKDVTCQVAYSRIEGDHIV 247
K++TC + +GD ++
Sbjct: 103 QKEITCPYTFPEGDGDILI 121
>SB_40061| Best HMM Match : PHD (HMM E-Value=0.015)
Length = 260
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 247 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 363
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQRDYCDAWYHTKCCSISNDSYNTLANSSCSW 142
>SB_6963| Best HMM Match : PHD (HMM E-Value=0.054)
Length = 146
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 280 WCEGWSDKLCCSIFNWSAISTKTASKTW 363
+C+ W CCSI N S + +S +W
Sbjct: 115 YCDAWYHTKCCSISNESYNTLANSSCSW 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,026,583
Number of Sequences: 59808
Number of extensions: 294721
Number of successful extensions: 882
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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