Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   175   1e-44
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   175   2e-44
At5g39430.1 68418.m04776 hypothetical protein                          29   1.4  
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   4.4  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   4.4  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  175 bits (427), Expect = 1e-44
 Identities = 88/166 (53%), Positives = 107/166 (64%)
 Frame = +2

Query: 23  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPXYRLIVRLSNKDV 202
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTP YR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 203 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 382
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG                  
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 383 XXXXXXXDEYNVEPVDXGPGAFRCYLDVGLARTTTGGXRVFGAMXG 520
                  ++++VEP D     FR  LDVGL RTTTG  RVFGA+ G
Sbjct: 121 GNVEATGEDFSVEPTD-SRRPFRALLDVGLIRTTTGN-RVFGALKG 164


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  175 bits (425), Expect = 2e-44
 Identities = 88/166 (53%), Positives = 107/166 (64%)
 Frame = +2

Query: 23  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPXYRLIVRLSNKDV 202
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTP YR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 203 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 382
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG                  
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 383 XXXXXXXDEYNVEPVDXGPGAFRCYLDVGLARTTTGGXRVFGAMXG 520
                  ++++VEP D     FR  LDVGL RTTTG  RVFGA+ G
Sbjct: 121 GNVEATGEDFSVEPTD-SRRPFRALLDVGLIRTTTGN-RVFGALKG 164


>At5g39430.1 68418.m04776 hypothetical protein 
          Length = 511

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 68  YQVKFKRRR---EGKTDYYARKRLVVQDKNKYNTPXY 169
           YQV FKRR    E  T++ + KRL+ + K  Y  P Y
Sbjct: 202 YQVSFKRRSCDGEEVTEHRSSKRLLYRPKAGYTIPCY 238


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 41  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPXYRLIVRLSNKDVTCQV 214
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 41  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPXYRLIVRLSNKDVTCQV 214
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,285,536
Number of Sequences: 28952
Number of extensions: 190331
Number of successful extensions: 426
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)