Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E08f
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    77   1e-15
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    77   1e-15
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   2.4  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   5.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   5.5  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    24   9.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    24   9.6  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    24   9.6  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 77.0 bits (181), Expect = 1e-15
 Identities = 31/66 (46%), Positives = 49/66 (74%)
 Frame = +3

Query: 258 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGKLVLAA 437
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TW KLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 438 RAVEAI 455
           R +  I
Sbjct: 65  RVIATI 70


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 77.0 bits (181), Expect = 1e-15
 Identities = 32/62 (51%), Positives = 47/62 (75%)
 Frame = +3

Query: 270 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGKLVLAARAVE 449
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TW KLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 450 AI 455
            I
Sbjct: 70  TI 71


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 446 DSTSSQ--NKFSPGTTQVDHMGTISTSFVDIGLHLEVN 339
           DSTS    NK+S G   V  +   S S  DIGLH E +
Sbjct: 355 DSTSRAIVNKYSLGNN-VSTVNPFSKSLYDIGLHAETD 391


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 401 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 252
           VD+ G I  S   I   LE+N    K GG    F G  F +  E V  + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 361  MSTNDVLMVPM*STCVVPGENLFWLLVL 444
            M+ N V  + +  T   PG N FW L++
Sbjct: 920  MTLNPVFQIGLNGTTHSPGNNSFWPLII 947


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 9   LKTIYIGISRNYALYLIAILDKFPF 83
           LK +Y+G++R  A   +  LDK  F
Sbjct: 358 LKEVYLGMARQSAYTTVHTLDKINF 382


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = -1

Query: 349 WKLTFSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTKPSCRI 209
           W L ++A  W   A     SSS   +TS     V     T   SC +
Sbjct: 729 WYLAYAAGLWANDAVYYPVSSSSTTTTSTSTGSVTTTSTTATASCTL 775


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 371 FVDIGLHLEVNIFCPKMGGCSKHFGDIFLVEGEHV 267
           F  I + ++V +F PK G C +  G I LV   H+
Sbjct: 69  FSFIWVRVDVLVFSPKKGDCLE--GKINLVSPSHI 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,416
Number of Sequences: 5004
Number of extensions: 38987
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)