Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E08f
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    83   1e-16
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    80   1e-15
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611...    31   0.33 
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    29   2.3  
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561...    28   3.1  
05_04_0123 + 18210069-18213737                                         27   9.5  
05_02_0105 + 6644264-6644344,6645573-6646097,6646185-6646410,664...    27   9.5  
05_01_0087 + 574623-574687,574797-574871,574987-575101                 27   9.5  
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486...    27   9.5  
03_01_0291 - 2250349-2250966,2251062-2251444,2251604-2251981,225...    27   9.5  
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222...    27   9.5  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 39/72 (54%), Positives = 50/72 (69%)
 Frame = +3

Query: 240 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWG 419
           ++A   G    L+  E+DV  MLAA  HLG +N +FQME YVYKRR+DG ++INL +TW 
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60

Query: 420 KLVLAARAVEAI 455
           KL LAAR + AI
Sbjct: 61  KLQLAARVIVAI 72


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 36/61 (59%), Positives = 45/61 (73%)
 Frame = +3

Query: 273 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGKLVLAARAVEA 452
           L+  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TW KL LAAR + A
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71

Query: 453 I 455
           I
Sbjct: 72  I 72


>05_02_0051 -
           6110320-6110375,6110554-6110696,6111011-6111124,
           6111586-6111685,6111768-6111850,6112003-6112087,
           6112773-6112828,6113569-6114056
          Length = 374

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 337 FSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTKPSCRI-RHEASCRFFLPLS 170
           FS    +VAA+ L  + S RA+T  PP + A+   T K + R  R E + R FL  S
Sbjct: 58  FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAKVAFRCGRAEDTLRAFLASS 114


>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
            23812210-23812285,23813064-23813072,23813243-23813335,
            23813578-23813581,23813780-23814703,23814926-23815909,
            23816073-23816118,23816376-23816951,23817253-23817798,
            23817820-23818416
          Length = 2252

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 340  TFSAPRWVVAASILVTSSSLRASTSNP 260
            TF A RWV+AA   V  + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126


>01_06_0902 +
           32853708-32853739,32854787-32855596,32856094-32856157,
           32856375-32856446
          Length = 325

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 347 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 454
           P   +C+ T C    C        K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300


>05_04_0123 + 18210069-18213737
          Length = 1222

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 222 GLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 398
           G + T + +   G   V+      V  ++ + + L  EN+N +    V+ RRA GT V+
Sbjct: 285 GALRTLLGSCGMGSAVVVTTRNVKVASIMESISPLCLENLNPEDSWIVFSRRAFGTGVV 343


>05_02_0105 +
           6644264-6644344,6645573-6646097,6646185-6646410,
           6646498-6646875,6647035-6647417,6647513-6648130
          Length = 736

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 452 GFDSTSSQNKFSPGTTQVDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHFGDI 291
           GFD+TS +    P   + + +GT   +++   +    ++F     GCSK  G +
Sbjct: 510 GFDATSCKFNIDPSEKEANKLGTTKYNYLTKPIKF-FHLFEELFVGCSKADGSL 562


>05_01_0087 + 574623-574687,574797-574871,574987-575101
          Length = 84

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 416 GKTCSGCSCC 445
           G +CSGCSCC
Sbjct: 72  GTSCSGCSCC 81


>04_01_0097 - 998766-999383,999479-999861,1000021-1000398,
            1000486-1000711,1000799-1001323,1003032-1003164,
            1004353-1004435,1004645-1005349,1005483-1005556,
            1006290-1006392,1006485-1006727
          Length = 1156

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 452  GFDSTSSQNKFSPGTTQVDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHFGDI 291
            GFD+TS +    P   + + +GT   +++   +    ++F     GCSK  G +
Sbjct: 930  GFDATSCKFNIDPSEKEANKLGTTKYNYLTKPIKF-FHLFEELFVGCSKADGSL 982


>03_01_0291 -
           2250349-2250966,2251062-2251444,2251604-2251981,
           2252147-2252294,2252382-2252906,2253990-2254112,
           2254151-2254205,2254510-2254640
          Length = 786

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 452 GFDSTSSQNKFSPGTTQVDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHFGDI 291
           GFD+TS +    P   + + +GT   +++   +    ++F     GCSK  G +
Sbjct: 560 GFDATSCKFNIDPSEKEANKLGTTKYNYLTKPIKF-FHLFEELFVGCSKADGSL 612


>01_01_0270 -
           2225250-2225263,2225549-2225732,2225817-2225972,
           2226276-2226374,2226489-2226563,2226682-2226750,
           2226917-2227115,2227492-2227597,2228118-2228526
          Length = 436

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 141 VLINE-NGVCGDKGKKKRHEASCRIRHEGLVVTQ 239
           + I+E + +CG +G+   +EAS RI+ E LV  Q
Sbjct: 205 IFIDEIDSLCGQRGECNENEASRRIKTELLVQMQ 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,689,759
Number of Sequences: 37544
Number of extensions: 260510
Number of successful extensions: 584
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)