Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E08f
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)                97   6e-21
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      31   0.60 
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_53893| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)                    27   5.6  
SB_7179| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_56501| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_36893| Best HMM Match : Fibrinogen_C (HMM E-Value=2.4e-24)          27   7.4  
SB_53784| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)              27   7.4  
SB_20506| Best HMM Match : Lig_chan (HMM E-Value=2.7)                  27   7.4  
SB_27437| Best HMM Match : Peptidase_M48 (HMM E-Value=8.4e-07)         27   9.7  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score = 97.1 bits (231), Expect = 6e-21
 Identities = 43/68 (63%), Positives = 54/68 (79%)
 Frame = +3

Query: 252 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGKLVL 431
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TW KL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 432 AARAVEAI 455
           AAR +  I
Sbjct: 61  AARIIVTI 68


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 153 ENGVCGDKGKKKRHEASCRIRHE 221
           ENG CG  G  +RHE  CR  HE
Sbjct: 665 ENGDCGGVGHLERHEIYCRQVHE 687


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 183 KKRHEASCRIRHEGLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAE 335
           KK+ E S   +  G V  ++  ++S   D  +L EE+  K   + TH+  E
Sbjct: 442 KKKEEVSKAWQDWGQVENEMWKSLSSAADKASLKEEEKAKYYESVTHMEVE 492


>SB_53893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 764

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 208 RHEASCRFFLPLSPQTPFSLISTNTRKLNMR 116
           R +A CRF   L+PQ P   I   T    +R
Sbjct: 695 RTDACCRFISCLTPQNPVDPIEATTHSYQLR 725


>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
          Length = 139

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 362 CLQTTC*WYPCD-QLASYLGKTCSGCSC 442
           C+Q  C    CD  + SY G+TC G +C
Sbjct: 87  CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114


>SB_7179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 208 RHEASCRFFLPLSPQTPFSLISTNTRKLNMR 116
           R +A CRF   L+PQ P   I   T    +R
Sbjct: 87  RTDACCRFISCLTPQNPVDPIEATTHSYQLR 117


>SB_56501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 11 KDDIYWNFKELRPVSNC 61
          K D YWN+K+  P  NC
Sbjct: 32 KVDPYWNYKKYGPAKNC 48


>SB_36893| Best HMM Match : Fibrinogen_C (HMM E-Value=2.4e-24)
          Length = 411

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
 Frame = +3

Query: 159 GVCGDKGKKKRHEASCRIRHEGLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAEN 338
           G C DK     +  +CR+ +EG +  ++  T     D+L+                GA  
Sbjct: 158 GSCTDKSDGLNYTCACRMGYEGEICEKVLLTSCA--DILSAGGTTSRVYEVNPDGQGAFQ 215

Query: 339 VNFQMETY-----VYKRRADGTHVINLRRTW 416
           V    ET      V++RR DG+  ++  R W
Sbjct: 216 VFCDQETLGGGWTVFQRRQDGS--VDFYRNW 244


>SB_53784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 11 KDDIYWNFKELRPVSNC 61
          K D YWN+K+  P  NC
Sbjct: 32 KVDPYWNYKKYGPAKNC 48


>SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)
          Length = 508

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 302 NACCNHPSWGRKC*LPDGDLC 364
           N CC H SW  +C  PD  +C
Sbjct: 406 NPCCAHQSWRAEC--PDEGVC 424


>SB_20506| Best HMM Match : Lig_chan (HMM E-Value=2.7)
          Length = 570

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 216 HEGLVVTQISATMSGGL-DVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTH 392
           H G  +T+ +  +   L D++ L++E     L  T H  A+     +ET++    A GT 
Sbjct: 263 HPGSSMTEAAVLLQTSLEDMVRLDDEPPVTRLIRTLHGSADGSRVLLETFI-ATHALGTS 321

Query: 393 VINLR 407
             NL+
Sbjct: 322 TKNLQ 326


>SB_27437| Best HMM Match : Peptidase_M48 (HMM E-Value=8.4e-07)
          Length = 185

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 192 HEASCRIRHEGLVVTQISATMSGGLDVLA 278
           HE S  I+H  ++++ +SAT++G +  LA
Sbjct: 80  HELS-HIKHRDILLSTVSATVAGAISALA 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,729,369
Number of Sequences: 59808
Number of extensions: 300118
Number of successful extensions: 640
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)