Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E08f
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    91   3e-19
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    27   6.5  
AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical ...    27   6.5  
AL110482-8|CAE17990.1|  193|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 41/68 (60%), Positives = 53/68 (77%)
 Frame = +3

Query: 252 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGKLVL 431
           MSGG    AL EEDV K+LA   HLG+ N+NFQM+ YVYKRR DG ++IN+++TW KL+L
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60

Query: 432 AARAVEAI 455
           AARA+ A+
Sbjct: 61  AARAIAAV 68


>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical
           protein B0412.3 protein.
          Length = 1107

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 207 RIRHEGLVVTQI-SATMSGGLDVLALNEEDVTKMLAA 314
           RI HEGL   ++ +A ++  +  L +N E V  +L+A
Sbjct: 414 RINHEGLATAEVEAAAVTAIIQRLVVNHEGVISLLSA 450


>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 149 NKYKYKKVEHALMNVQNLNVN 87
           NKY+ K   H L NVQ L VN
Sbjct: 96  NKYQIKDAVHKLYNVQALKVN 116


>AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical
           protein C11D9.1 protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -1

Query: 343 LTFSAPRWV-VAASILVTSSSLRASTSNPPDIVALI*VTTKPSCRIRHEASCRFFLPLSP 167
           +T  APR   V  S++   S L +S  N  D+  L+        RI      R   PL+P
Sbjct: 147 VTSFAPRCAQVGDSVVAVDSELISSVRNASDVEKLL--------RIGKVIHLRRKTPLTP 198

Query: 166 QTPFSLISTNTRK 128
           + P  L +TN  K
Sbjct: 199 RAPSQLDATNVNK 211


>AL110482-8|CAE17990.1|  193|Caenorhabditis elegans Hypothetical
           protein Y39G8B.10 protein.
          Length = 193

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 383 WYPCDQLASYLGKTCSGCS 439
           WY C     Y  KTC  CS
Sbjct: 156 WYKCSDRIKYCPKTCGYCS 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,964,928
Number of Sequences: 27780
Number of extensions: 230816
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)