Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E08f
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...    74   4e-14
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...    74   4e-14
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...    73   9e-14
At2g22340.1 68415.m02651 hypothetical protein                          33   0.12 
At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family pr...    30   0.65 
At4g14850.1 68417.m02282 pentatricopeptide (PPR) repeat-containi...    29   1.5  
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat...    27   6.0  
At4g10000.2 68417.m01637 expressed protein                             27   7.9  
At4g10000.1 68417.m01636 expressed protein                             27   7.9  
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica...    27   7.9  
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)...    27   7.9  

>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 32/57 (56%), Positives = 42/57 (73%)
 Frame = +3

Query: 285 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGKLVLAARAVEAI 455
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW KL +AAR + AI
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAI 73


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 32/57 (56%), Positives = 42/57 (73%)
 Frame = +3

Query: 285 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGKLVLAARAVEAI 455
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW KL +AAR + AI
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAI 73


>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score = 72.9 bits (171), Expect = 9e-14
 Identities = 33/61 (54%), Positives = 42/61 (68%)
 Frame = +3

Query: 273 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGKLVLAARAVEA 452
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TW KL +AAR + A
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 453 I 455
           I
Sbjct: 72  I 72


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 323 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 442
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family
           protein
          Length = 592

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 171 DKGKKKRHEASCRIRHEGLVVTQISATMSGGLDVL-ALNEEDVT 299
           DK KKK +  +    H   V+ ++++ +SGG+ V    N+E+VT
Sbjct: 102 DKEKKKNNTNTAEQEHRKRVIRELNSLISGGIGVSDESNDEEVT 145


>At4g14850.1 68417.m02282 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 651

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 100 FCTFINACSTFLYLYLLMKM 159
           FC F+NACS +L+L L M++
Sbjct: 212 FCAFLNACSDWLHLNLGMQL 231


>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1028

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -1

Query: 256 DIVALI*VTTKPSCRIRHEASCRFFLPLSPQTPFSLISTNTR 131
           DIVA   +T  PS   + EAS   F P SP TP ++ ++N R
Sbjct: 179 DIVA---ITAPPSNNNQTEASGNLFCPFSP-TPANVENSNLR 216


>At4g10000.2 68417.m01637 expressed protein
          Length = 333

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 280 RASTSNPPDIVALI*VTTKPSCRIRHEASCRFFLP 176
           +AST  PP ++ L      P  R+  EA C   LP
Sbjct: 242 KASTDLPPKMLELFSYENNPYSRLVREALCELELP 276


>At4g10000.1 68417.m01636 expressed protein
          Length = 333

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 280 RASTSNPPDIVALI*VTTKPSCRIRHEASCRFFLP 176
           +AST  PP ++ L      P  R+  EA C   LP
Sbjct: 242 KASTDLPPKMLELFSYENNPYSRLVREALCELELP 276


>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
           to floral homeotic protein HUA1 [Arabidopsis thaliana]
           gi|16797661|gb|AAK01470
          Length = 524

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 220 SCRIRHEASCRFFLPLSPQTPFSLISTNTRKLNM 119
           +CR  H     F +P +    +SL+S+NT  LN+
Sbjct: 360 TCRYNHPERTAF-IPQAAGVNYSLVSSNTANLNL 392


>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
           identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
           4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
           thaliana}
          Length = 702

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 150 NENGVCGDKGKKKRHEASC 206
           N N  CGDKG  K   ASC
Sbjct: 632 NNNKACGDKGNDKLVVASC 650


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,284,439
Number of Sequences: 28952
Number of extensions: 207798
Number of successful extensions: 449
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)