Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10049| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     27   7.1  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     27   7.1  
SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)                  27   9.4  

>SB_10049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 56  VNIRPPVIIIT*WNEYKKNLLSKYS 130
           +N   PV+II  WN  K N L KYS
Sbjct: 61  MNHDTPVVIILGWNSSKDNHLRKYS 85


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -2

Query: 442 YQSIFLNF--YDIFKT---ASSPITKHNYLNILLLWSCKEYFEIL 323
           Y+S FLN   Y +FK+   A S     +YLN+LL W  K Y  +L
Sbjct: 78  YKS-FLNVLSYWLFKSYLNALSYCPYKSYLNVLLYWPYKSYLNVL 121


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -2

Query: 442 YQSIFLNF--YDIFKT---ASSPITKHNYLNILLLWSCKEYFEIL 323
           Y+S FLN   Y +FK+   A S     +YLN+LL W  K Y  +L
Sbjct: 62  YKS-FLNVLSYWLFKSYLNALSYCPYKSYLNVLLYWPYKSYLNVL 105


>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
          Length = 1803

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 459  RCY*CPDN--YNYCDNEDRYAP 518
            RCY CPDN  YN  DN+   +P
Sbjct: 1546 RCYSCPDNKIYNSLDNKKFNSP 1567


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,085,262
Number of Sequences: 59808
Number of extensions: 209568
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)