Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309E03f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 165 2e-41
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 165 2e-41
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 153 7e-38
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 62 3e-10
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 60 1e-09
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 58 3e-09
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 58 3e-09
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 58 3e-09
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 58 5e-09
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 58 5e-09
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 56 1e-08
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 56 1e-08
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 55 3e-08
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 54 8e-08
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 53 1e-07
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 49 2e-06
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 49 2e-06
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 49 2e-06
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 49 2e-06
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 48 3e-06
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 48 4e-06
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 48 5e-06
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 48 5e-06
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 47 9e-06
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 47 9e-06
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 46 1e-05
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 45 4e-05
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 45 4e-05
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 44 8e-05
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 44 8e-05
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 44 8e-05
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 44 8e-05
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 44 8e-05
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 44 8e-05
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 44 8e-05
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 44 8e-05
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 44 8e-05
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 43 1e-04
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 43 1e-04
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 42 2e-04
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 42 3e-04
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 42 3e-04
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 42 3e-04
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 42 3e-04
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 42 3e-04
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 42 3e-04
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 42 3e-04
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 42 3e-04
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 42 3e-04
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 42 3e-04
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 42 3e-04
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 42 3e-04
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 42 3e-04
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 41 4e-04
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 41 4e-04
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 41 4e-04
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 41 4e-04
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 41 4e-04
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 41 4e-04
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 41 6e-04
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 40 8e-04
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 40 8e-04
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 40 0.001
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 40 0.001
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 40 0.001
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 40 0.001
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 40 0.001
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 39 0.002
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 39 0.002
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 39 0.002
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 39 0.002
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 38 0.003
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 38 0.004
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 38 0.004
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 38 0.005
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 38 0.005
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 38 0.005
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 37 0.007
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 37 0.007
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 37 0.007
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 37 0.007
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 37 0.009
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 37 0.009
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 37 0.009
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 36 0.012
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 36 0.012
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 36 0.017
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 36 0.017
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 36 0.017
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 36 0.022
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 36 0.022
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 35 0.029
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 35 0.029
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 35 0.029
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 35 0.038
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 35 0.038
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 34 0.050
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 34 0.050
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea... 34 0.067
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 34 0.067
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 34 0.067
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 34 0.067
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 34 0.067
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 34 0.067
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 33 0.088
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 33 0.088
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 33 0.088
At1g69400.2 68414.m07968 transducin family protein / WD-40 repea... 33 0.088
At1g69400.1 68414.m07969 transducin family protein / WD-40 repea... 33 0.088
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 33 0.088
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 33 0.12
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 33 0.12
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 33 0.12
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 33 0.12
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 33 0.12
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 33 0.12
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 33 0.12
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.12
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 33 0.12
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 33 0.15
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 33 0.15
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 32 0.20
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 32 0.20
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 32 0.27
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 32 0.27
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 31 0.36
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 31 0.36
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 31 0.47
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ... 31 0.47
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 31 0.47
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 31 0.47
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 31 0.47
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 31 0.47
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 31 0.47
At5g11240.1 68418.m01313 transducin family protein / WD-40 repea... 31 0.62
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 31 0.62
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 31 0.62
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 31 0.62
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 30 0.82
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 0.82
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 30 1.1
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 30 1.1
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 30 1.1
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 30 1.1
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 30 1.1
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 30 1.1
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 30 1.1
At1g30370.1 68414.m03713 lipase class 3 family protein similar t... 30 1.1
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 29 1.4
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 29 1.4
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 29 1.9
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 29 1.9
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 29 2.5
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 29 2.5
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 29 2.5
At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro... 29 2.5
At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutas... 28 3.3
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 28 3.3
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 28 3.3
At2g02650.1 68415.m00204 reverse transcriptase-related similar t... 28 3.3
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 28 3.3
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 28 3.3
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 28 4.4
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 28 4.4
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 28 4.4
At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase, p... 28 4.4
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 28 4.4
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 28 4.4
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 28 4.4
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 28 4.4
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 28 4.4
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf... 27 5.8
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 27 5.8
At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pf... 27 5.8
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 27 5.8
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 27 5.8
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 27 5.8
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 27 5.8
At5g38590.2 68418.m04666 F-box family protein contains F-box dom... 27 7.7
At5g38590.1 68418.m04667 F-box family protein contains F-box dom... 27 7.7
At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-conta... 27 7.7
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 27 7.7
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 27 7.7
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 27 7.7
At2g20310.1 68415.m02372 expressed protein 27 7.7
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi... 27 7.7
At1g69150.1 68414.m07911 DC1 domain-containing protein contains ... 27 7.7
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 165 bits (401), Expect = 2e-41
Identities = 77/162 (47%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Frame = +1
Query: 37 MKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVN 216
++L +++++S + VFR+ +I+SIDF +++ S+DD I +YD T + T+N
Sbjct: 13 LELSEEIIQSMEPGAVFRDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVASATCLKTIN 72
Query: 217 SKKYGVDLIHFTHAKNTAIHSSTKV-DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVE 393
SKKYGVDL+ FT T I+SS DD++R LSLHDNKY+RYF GH +VV++ L
Sbjct: 73 SKKYGVDLVCFTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVSLSLCSGG 132
Query: 394 DTFLSGSLDKTLRLWDLRSPNCQGLMHLSGRPVAAYDPEGLI 519
+ F+SGSLD+T+ LWD R CQGL+ + GRP AAYD +GLI
Sbjct: 133 ECFISGSLDRTVLLWDQRVEKCQGLLRVQGRPAAAYDDQGLI 174
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 165 bits (401), Expect = 2e-41
Identities = 77/162 (47%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Frame = +1
Query: 37 MKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVN 216
++L +++++S + VFR+ +I+SIDF +++ S+DD I +YD T + T+N
Sbjct: 10 LELSEEIIQSMEPGAVFRDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVASATCLKTIN 69
Query: 217 SKKYGVDLIHFTHAKNTAIHSSTKV-DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVE 393
SKKYGVDL+ FT T I+SS DD++R LSLHDNKY+RYF GH +VV++ L
Sbjct: 70 SKKYGVDLVCFTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVSLSLCSGG 129
Query: 394 DTFLSGSLDKTLRLWDLRSPNCQGLMHLSGRPVAAYDPEGLI 519
+ F+SGSLD+T+ LWD R CQGL+ + GRP AAYD +GLI
Sbjct: 130 ECFISGSLDRTVLLWDQRVEKCQGLLRVQGRPAAAYDDQGLI 171
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 153 bits (371), Expect = 7e-38
Identities = 69/168 (41%), Positives = 109/168 (64%), Gaps = 4/168 (2%)
Frame = +1
Query: 28 IKMMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMI 207
+ + +L D +VR + VF + KI+S+ F + L++ SEDD + ++D Q+
Sbjct: 1 MSLTELDDGLVRRMAMGAVFSDFGGKIHSVGFHRTDDLLVTSSEDDSLRLFDIANAKQLK 60
Query: 208 TVNSKKYGVDLIHFTHAKNTAIHSST----KVDDTIRYLSLHDNKYIRYFPGHTKKVVTM 375
KK+G D + FTH ++ I SS +++RYLS++DN+ +RYF GH +VV++
Sbjct: 61 ITYHKKHGTDRVCFTHHPSSLICSSRYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSL 120
Query: 376 CLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSGRPVAAYDPEGLI 519
C+SP+ D+F+SGSLD+++RLWDLR CQG++HL GRP AYD +GL+
Sbjct: 121 CMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLV 168
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 61.7 bits (143), Expect = 3e-10
Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMIT-VNSKKYGV 234
V++ K ++ + ++ I+S+ F+ +G ++S S D I+D ++GT + T ++ K V
Sbjct: 157 VKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKTLIDDKSPAV 216
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKV--VTMCLSPVEDTFL- 405
F + N +D T++ + K+++ + GHT KV +T S ++
Sbjct: 217 SFAKF--SPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITSAFSVTNGKYIV 274
Query: 406 SGSLDKTLRLWDLRSPN 456
SGS D + LWDL++ N
Sbjct: 275 SGSEDNCVYLWDLQARN 291
Score = 51.6 bits (118), Expect = 3e-07
Identities = 29/149 (19%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Frame = +1
Query: 55 VVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGV 234
+ + ++ K +T I+ + FS +G L S S D ++++ + + G+
Sbjct: 29 IYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHRYEGHSSGI 88
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDN-KYIRYFPGHTKKVVTMCLSPVEDTFLSG 411
+ ++ + +S D T+R + ++ GHT V + +P + +SG
Sbjct: 89 SDLAWSSDSHYTCSASD--DCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSG 146
Query: 412 SLDKTLRLWDLRSPNCQGLMHLSGRPVAA 498
S D+T+R+W++++ C ++ P+++
Sbjct: 147 SFDETIRIWEVKTGKCVRMIKAHSMPISS 175
Score = 40.3 bits (90), Expect = 8e-04
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = +1
Query: 91 ENTDKINSIDFSPNGETLISCSEDDQIVI--YDCEKGTQMITVNSKKYGVDLIHFTHAKN 264
+ + ++ FSPNG+ ++ + D + + Y K ++ T ++ K F+
Sbjct: 211 DKSPAVSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITSAFSVTNG 270
Query: 265 TAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGS--LDKTLRLW 438
I S ++ D+ + L ++ GHT V+++ PV++ S LDKT+R+W
Sbjct: 271 KYIVSGSE-DNCVYLWDLQARNILQRLEGHTDAVISVSCHPVQNEISSSGNHLDKTIRIW 329
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 59.7 bits (138), Expect = 1e-09
Identities = 37/139 (26%), Positives = 65/139 (46%)
Frame = +1
Query: 34 MMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITV 213
++KL D V K+ + F + ++++F P GE L S S D + I+D K + T
Sbjct: 81 VIKLWD--VEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIRKKGCIQTY 138
Query: 214 NSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVE 393
G+ I FT + S +D+ ++ L K + F H + ++ P+E
Sbjct: 139 KGHSRGISTIRFTPDGRWVV--SGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLE 196
Query: 394 DTFLSGSLDKTLRLWDLRS 450
+GS D+T++ WDL +
Sbjct: 197 FLLATGSADRTVKFWDLET 215
Score = 47.2 bits (107), Expect = 7e-06
Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 3/154 (1%)
Frame = +1
Query: 61 RSFKVAKVFRENTDKINSIDFSPNGETLISCSEDD-QIVIYDCEKGTQMITVNSKKYGVD 237
R +K+ + F ++ +N + L DD ++ ++ K T ++++ VD
Sbjct: 4 RGYKLQE-FLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLMSLCGHTSAVD 62
Query: 238 LIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSL 417
+ F A+ + ++ I+ + + K +R F GH + P + SGS
Sbjct: 63 SVAFDSAEVLVLAGASS--GVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSS 120
Query: 418 DKTLRLWDLRSPNCQGLM--HLSGRPVAAYDPEG 513
D L++WD+R C H G + P+G
Sbjct: 121 DANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDG 154
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 58.4 bits (135), Expect = 3e-09
Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Frame = +1
Query: 61 RSFKVAKVFRENTDKINSIDFS-PNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVD 237
R++K+ + F ++ +N + + L++ ED ++ ++ K ++++ G+D
Sbjct: 5 RAYKLQE-FVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGID 63
Query: 238 LIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSL 417
+ F ++ + ++ TI+ L + K +R GH +++ P + F SGSL
Sbjct: 64 SVTFDASE--VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL 121
Query: 418 DKTLRLWDLRSPNCQGLM--HLSGRPVAAYDPEG 513
D L++WD+R C H G V + P+G
Sbjct: 122 DTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG 155
Score = 55.2 bits (127), Expect = 3e-08
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 2/150 (1%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHF 249
K+ + + S+DF P GE S S D + I+D K + T GV+++ F
Sbjct: 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRF 151
Query: 250 THAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTL 429
T + D+ ++ L K + F H ++ ++ P E +GS D+T+
Sbjct: 152 TPDGRWVVSGGE--DNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTV 209
Query: 430 RLWDLRSPNC--QGLMHLSGRPVAAYDPEG 513
+ WDL + G +G +++P+G
Sbjct: 210 KFWDLETFELIGSGGPETAGVRCLSFNPDG 239
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 58.4 bits (135), Expect = 3e-09
Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Frame = +1
Query: 61 RSFKVAKVFRENTDKINSIDFS-PNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVD 237
R++K+ + F ++ +N + + L++ ED ++ ++ K ++++ G+D
Sbjct: 5 RAYKLQE-FVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGID 63
Query: 238 LIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSL 417
+ F ++ + ++ TI+ L + K +R GH +++ P + F SGSL
Sbjct: 64 SVTFDASE--VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL 121
Query: 418 DKTLRLWDLRSPNCQGLM--HLSGRPVAAYDPEG 513
D L++WD+R C H G V + P+G
Sbjct: 122 DTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG 155
Score = 55.2 bits (127), Expect = 3e-08
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 2/150 (1%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHF 249
K+ + + S+DF P GE S S D + I+D K + T GV+++ F
Sbjct: 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRF 151
Query: 250 THAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTL 429
T + D+ ++ L K + F H ++ ++ P E +GS D+T+
Sbjct: 152 TPDGRWVVSGGE--DNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTV 209
Query: 430 RLWDLRSPNC--QGLMHLSGRPVAAYDPEG 513
+ WDL + G +G +++P+G
Sbjct: 210 KFWDLETFELIGSGGPETAGVRCLSFNPDG 239
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 58.4 bits (135), Expect = 3e-09
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Frame = +1
Query: 67 FKVAKVFRE---NTDKINSIDFS-PNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGV 234
F + FRE ++ +N + + L++ ED ++ ++ K ++++ G+
Sbjct: 96 FSLISSFREFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGI 155
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
D + F ++ ++ TI+ L + K +R GH V++ P + F SGS
Sbjct: 156 DSVTFDASEGLV--AAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGS 213
Query: 415 LDKTLRLWDLRSPNCQGLM--HLSGRPVAAYDPEG 513
LD L++WD+R C H G V + P+G
Sbjct: 214 LDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG 248
Score = 56.8 bits (131), Expect = 8e-09
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 2/150 (1%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHF 249
KV + + S++F P GE S S D + I+D K + T GV+++ F
Sbjct: 185 KVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRF 244
Query: 250 THAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTL 429
T + D+ ++ L K + F H K+ ++ P E +GS DKT+
Sbjct: 245 TPDGRWIVSGGE--DNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTV 302
Query: 430 RLWDLRSPNC--QGLMHLSGRPVAAYDPEG 513
+ WDL + G +G ++P+G
Sbjct: 303 KFWDLETFELIGSGGTETTGVRCLTFNPDG 332
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 57.6 bits (133), Expect = 5e-09
Identities = 35/131 (26%), Positives = 62/131 (47%)
Frame = +1
Query: 67 FKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIH 246
++ + F + D + IDFS + E L S S+D +I I+ G + ++ GV +
Sbjct: 253 YQADESFMMHDDPVLCIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLS 312
Query: 247 FTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKT 426
F+ + + ST D T R L K ++ F GHT V + ++ S D T
Sbjct: 313 FSRDGSQLL--STSFDQTARIHGLKSGKLLKEFRGHTSYVNHAIFTSDGSRIITASSDCT 370
Query: 427 LRLWDLRSPNC 459
+++WD ++ +C
Sbjct: 371 VKVWDSKTTDC 381
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 57.6 bits (133), Expect = 5e-09
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 2/150 (1%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHF 249
K+ + F + ++++F P GE L S S D + ++D K + T G+ I F
Sbjct: 40 KMVRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEF 99
Query: 250 THAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTL 429
+ + S +D+ ++ L K + F H + ++ P+E +GS D+T+
Sbjct: 100 SPDGRWVV--SGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTV 157
Query: 430 RLWDLRSPNCQGLM--HLSGRPVAAYDPEG 513
+ WDL + G +G A+ P+G
Sbjct: 158 KFWDLETFELIGTTRPEATGVRAIAFHPDG 187
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/117 (21%), Positives = 52/117 (44%)
Frame = +1
Query: 94 NTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAI 273
+T ++S+ F+ +++ + I ++D E+ + + + F H +
Sbjct: 6 HTSPVDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEF-HPFGEFL 64
Query: 274 HSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
S + D +R I+ + GHT+ + T+ SP +SG LD +++WDL
Sbjct: 65 ASGSS-DTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDL 120
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +1
Query: 301 IRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLM--H 474
I+ L ++K +R F GH + P + SGS D LR+WD R C H
Sbjct: 31 IKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGH 90
Query: 475 LSGRPVAAYDPEG 513
G + P+G
Sbjct: 91 TRGISTIEFSPDG 103
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCE 189
+ +F++ R + +I F P+G+TL C DD + +Y E
Sbjct: 162 LETFELIGTTRPEATGVRAIAFHPDGQTLF-CGLDDGLKVYSWE 204
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 56.4 bits (130), Expect = 1e-08
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Frame = +1
Query: 76 AKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHF-- 249
AK F + ++N + + P G L SCS+D I++ ++ T + + + I +
Sbjct: 441 AKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTIRWSP 500
Query: 250 ----THAKNTAIH-SSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
T+ N + +S D T++ K + F GH + V ++ SP + SGS
Sbjct: 501 TGPGTNNPNKQLTLASASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASGS 560
Query: 415 LDKTLRLWDLR 447
LDK++ +W ++
Sbjct: 561 LDKSIHIWSIK 571
Score = 33.9 bits (74), Expect = 0.067
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 325 NKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
N +R GHT +V SP SGS D T R+W +
Sbjct: 255 NSDVRILEGHTSEVCACAWSPSASLLASGSGDATARIWSI 294
Score = 30.7 bits (66), Expect = 0.62
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYD--CEKGTQMITVNSKKYGVDLIHFTHAKNTAIHS 279
I S+ ++ G+ L++ S D V++D E+ Q +S G L +N +
Sbjct: 368 IFSLKWNKKGDYLLTGSVDRTAVVWDVKAEEWKQQFEFHS---GPTLD--VDWRNNVSFA 422
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
++ D I + + + + F GH +V + P S S D T ++W+++
Sbjct: 423 TSSTDSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIK 478
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKG 195
F + + + S+ FSPNGE + S S D I I+ ++G
Sbjct: 537 FNGHREPVYSLAFSPNGEYIASGSLDKSIHIWSIKEG 573
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 56.4 bits (130), Expect = 1e-08
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 1/129 (0%)
Frame = +1
Query: 67 FKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIH 246
+K +V + + + S+ F P+ E + S D I I+D G +T+ ++ +
Sbjct: 166 WKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGH---IEQVR 222
Query: 247 FTHAKNTAIHSSTKVDDT-IRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDK 423
N + + DD ++ L NK IR + GH V + L P D L+G D
Sbjct: 223 GLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDS 282
Query: 424 TLRLWDLRS 450
R+WD+R+
Sbjct: 283 VCRVWDIRT 291
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/116 (19%), Positives = 46/116 (39%)
Frame = +1
Query: 100 DKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHS 279
+++ + S + S +D Q+ +D E+ + + + GV + + +
Sbjct: 219 EQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTG 278
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
D R + I GH V ++ P + ++GS D T++ WDLR
Sbjct: 279 GR--DSVCRVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLR 332
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 54.8 bits (126), Expect = 3e-08
Identities = 35/128 (27%), Positives = 61/128 (47%)
Frame = +1
Query: 67 FKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIH 246
+K +V + + + S+ F P+ E + S D I I+D G +T+ V +
Sbjct: 160 WKNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGLA 219
Query: 247 FTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKT 426
++ ++T + S+ D ++ L NK IR + GH V + L P D L+G D
Sbjct: 220 VSN-RHTYMFSAGD-DKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSV 277
Query: 427 LRLWDLRS 450
R+WD+R+
Sbjct: 278 CRVWDIRT 285
Score = 36.3 bits (80), Expect = 0.012
Identities = 22/102 (21%), Positives = 42/102 (41%)
Frame = +1
Query: 142 LISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLH 321
+ S +D Q+ +D E+ + + + +GV + + + D R +
Sbjct: 227 MFSAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGR--DSVCRVWDIR 284
Query: 322 DNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
I P H V ++ P + ++GS D T++ WDLR
Sbjct: 285 TKMQIFVLP-HDSDVFSVLARPTDPQVITGSHDSTIKFWDLR 325
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 53.6 bits (123), Expect = 8e-08
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKY-----GVDLIHFTHAKNTA 270
++S+ FS +G L S S D I Y I +++ G+ + F+
Sbjct: 27 VSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFSSDARFI 86
Query: 271 IHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
+ +S D T++ + I+ GHT + +P + +SGS D+T+R+WD+ +
Sbjct: 87 VSASD--DKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTT 144
Query: 451 PNCQGLMHLSGRPVAAYD 504
C ++ PV A D
Sbjct: 145 GKCLKVLPAHSDPVTAVD 162
Score = 51.2 bits (117), Expect = 4e-07
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Frame = +1
Query: 73 VAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMIT----VNSKKYGVDL 240
V + + ++ + FSPNG+ ++ + D+ + +++ + T VN++
Sbjct: 190 VKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSA 249
Query: 241 IHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLD 420
T+ K S D+ + L+ K ++ GHT+ V+ + P E+ SGSLD
Sbjct: 250 FSVTNGKRIVSGSE---DNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLD 306
Query: 421 KTLRLW 438
KT+R+W
Sbjct: 307 KTVRIW 312
Score = 50.8 bits (116), Expect = 5e-07
Identities = 28/125 (22%), Positives = 57/125 (45%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKN 264
F + + I+ + FS + ++S S+D + ++D E G+ + T+ ++F N
Sbjct: 67 FTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSN 126
Query: 265 TAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
+ S D+T+R + K ++ P H+ V + + +S S D R+WD
Sbjct: 127 MIVSGS--FDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDS 184
Query: 445 RSPNC 459
+ +C
Sbjct: 185 GTGHC 189
Score = 46.4 bits (105), Expect = 1e-05
Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMIT-VNSKKYGV 234
V + K KV ++D + ++DF+ +G ++S S D I+D G + T ++ + V
Sbjct: 142 VTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDENPPV 201
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGH--TKKVVTMCLSPVE-DTFL 405
+ F + N +D+T+R ++ K+++ + GH + ++ S +
Sbjct: 202 SFVRF--SPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIV 259
Query: 406 SGSLDKTLRLWDLRS 450
SGS D + +W+L S
Sbjct: 260 SGSEDNCVHMWELNS 274
Score = 37.9 bits (84), Expect = 0.004
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 1/141 (0%)
Frame = +1
Query: 31 KMMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMIT 210
K +KL D V + + K +T+ ++F+P ++S S D+ + I+D G +
Sbjct: 93 KTLKLWD--VETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKV 150
Query: 211 VNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIR-YFPGHTKKVVTMCLSP 387
+ + V + F + + SS D R ++ V + SP
Sbjct: 151 LPAHSDPVTAVDFNRDGSLIVSSS--YDGLCRIWDSGTGHCVKTLIDDENPPVSFVRFSP 208
Query: 388 VEDTFLSGSLDKTLRLWDLRS 450
L G+LD TLRLW++ S
Sbjct: 209 NGKFILVGTLDNTLRLWNISS 229
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 52.8 bits (121), Expect = 1e-07
Identities = 34/123 (27%), Positives = 56/123 (45%)
Frame = +1
Query: 79 KVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHA 258
+ F + D++ + F P+G+ L + S D ++D G +++ V I F
Sbjct: 333 QTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQ-- 390
Query: 259 KNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
++ A+ +S +D R L + I F GH K V ++ SP SG D R+W
Sbjct: 391 QDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIW 450
Query: 439 DLR 447
DLR
Sbjct: 451 DLR 453
Score = 47.2 bits (107), Expect = 7e-06
Identities = 29/127 (22%), Positives = 59/127 (46%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVD 237
+R+ + VF+ + + S++FSPNG L S ED+Q I+D + + + V
Sbjct: 410 LRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVS 469
Query: 238 LIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSL 417
+ + + + ++ D + S D ++ GH KV ++ ++ + S
Sbjct: 470 QVKYEPQEGYFL-ATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSH 528
Query: 418 DKTLRLW 438
D+T++LW
Sbjct: 529 DRTIKLW 535
Score = 36.7 bits (81), Expect = 0.009
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITV--NSKKYGVDLIHFTHAKNTAIHS 279
+ FS +G+ L +CS +++ + T I V + K+ D++ F+ + +
Sbjct: 258 LTGCSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVV-FSPVDDCLATA 316
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
S D L D ++ F GH ++ + P + S DKT RLWD+ +
Sbjct: 317 SA---DRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINT 370
Score = 33.9 bits (74), Expect = 0.067
Identities = 27/123 (21%), Positives = 51/123 (41%)
Frame = +1
Query: 82 VFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAK 261
V +++ ++ + FSP + L + S D ++ + GT + T + + F H
Sbjct: 293 VLKDHKERATDVVFSPVDDCLATASADRTAKLWKTD-GTLLQTFEGHLDRLARVAF-HPS 350
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
+ +T D T R ++ + GH++ V + S LD R+WD
Sbjct: 351 GKYL-GTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWD 409
Query: 442 LRS 450
LR+
Sbjct: 410 LRT 412
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 49.2 bits (112), Expect = 2e-06
Identities = 31/127 (24%), Positives = 58/127 (45%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHF 249
K A + + + + + F+ +G ++C +D I +++ +G + T S V +H
Sbjct: 9 KEAHILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHGREVRDVHV 68
Query: 250 THAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTL 429
T + A S D + Y + + IR F GH +V + + +S D++L
Sbjct: 69 T--SDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSL 126
Query: 430 RLWDLRS 450
R+WD RS
Sbjct: 127 RVWDCRS 133
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Frame = +1
Query: 112 SIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKV 291
S+ +SPNG+ L S D I ++D ++ + + V + F+ + S +
Sbjct: 163 SVAWSPNGKRLACGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGS-- 220
Query: 292 DDTIRYLSLHDNK---YIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
DD ++++HD + + GHT V+++ SP +GS D+T+RLWDL+
Sbjct: 221 DDG--HVNMHDAEGKTLLGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWDLK 273
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 48.8 bits (111), Expect = 2e-06
Identities = 29/120 (24%), Positives = 53/120 (44%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKN 264
F E+ + + F + +S +D +I +++ + + T+ + + F H
Sbjct: 47 FDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENP 106
Query: 265 TAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
+ +S D TIR + I GH V+ P ED +S SLD+T+R+WD+
Sbjct: 107 WIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
Score = 36.3 bits (80), Expect = 0.012
Identities = 23/125 (18%), Positives = 54/125 (43%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKN 264
F ++++ + F P +++ I ++D GT + + + V +HF +++
Sbjct: 5 FETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQP 64
Query: 265 TAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
+ D I+ + ++ + GH + T+ +S S D+T+R+W+
Sbjct: 65 LFVSGGD--DYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNW 122
Query: 445 RSPNC 459
+S C
Sbjct: 123 QSRTC 127
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
GH V ++ +D +S S DK++R+WD
Sbjct: 246 GHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD 276
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 48.8 bits (111), Expect = 2e-06
Identities = 28/124 (22%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAK 261
F+E+ ++ S+D++P ++ ++ S DD + ++ ++ + T Y V + + K
Sbjct: 102 FQEHAREVQSVDYNPTRRDSFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVW-NPK 160
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLS-GSLDKTLRLW 438
+ + +S D T+R + + P H ++++ + +D L+ S+DKT+++W
Sbjct: 161 HGDVFASASGDCTLRIWDVREPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKTVKVW 220
Query: 439 DLRS 450
D+RS
Sbjct: 221 DVRS 224
Score = 37.9 bits (84), Expect = 0.004
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Frame = +1
Query: 91 ENTDKINSIDFSPNGET-LISCSEDDQIVIYDCEKGTQMITVNS-KKYG--VDLIHFTHA 258
+ D + + +S + ++ LI+ D + IYD + S +++ V + +
Sbjct: 58 DTADAVYDVCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYNPT 117
Query: 259 KNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVE-DTFLSGSLDKTLRL 435
+ + +S+ DDT++ ++ +R F H V +P D F S S D TLR+
Sbjct: 118 RRDSFLTSSW-DDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRI 176
Query: 436 WDLRSP 453
WD+R P
Sbjct: 177 WDVREP 182
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/111 (26%), Positives = 55/111 (49%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSST 285
+N + FSP+G+ + S S D + +++ G Q +TV G + + + ++ + S
Sbjct: 363 VNHVYFSPDGKWIASASFDKSVRLWNGITG-QFVTVFRGHVG-PVYQVSWSADSRLLLSG 420
Query: 286 KVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
D T++ + K + PGH +V + SP + +SG D+ L+LW
Sbjct: 421 SKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLW 471
Score = 36.7 bits (81), Expect = 0.009
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 277 SSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
+S D ++R + +++ F GH V + S LSGS D TL++W++R+
Sbjct: 376 ASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRT 433
Score = 35.9 bits (79), Expect = 0.017
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 325 NKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL--RSP--NCQGLMHLSGRPV 492
N+ + GH + V+ + SP SGS D T+RLWDL +P C+G H +
Sbjct: 99 NRCSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKG--HKNWVLT 156
Query: 493 AAYDPEG 513
A+ P+G
Sbjct: 157 VAWSPDG 163
Score = 29.5 bits (63), Expect = 1.4
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Frame = +1
Query: 112 SIDFSPNGETLISCSEDDQIVIYDCEKG--TQMITVNSKKY--GV--DLIHFTHAKNTAI 273
++ +SP+G+ L+S S+ +I ++ +KG KK+ G+ + +H + +
Sbjct: 156 TVAWSPDGKHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRRFV 215
Query: 274 HSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFL-SGSLDKTLRLWD 441
SS D I ++L K I GHT V C+ D + +GS D T+++W+
Sbjct: 216 TSSKDGDARIWDITL--KKSIICLSGHTLAVT--CVKWGGDGIIYTGSQDCTIKMWE 268
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSED 162
+R+ K+ + + D++ ++D+SP+GE ++S +D
Sbjct: 431 IRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKD 465
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 48.0 bits (109), Expect = 4e-06
Identities = 28/120 (23%), Positives = 53/120 (44%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKN 264
F E+ + + F + +S +D +I +++ + + T+ + + F H
Sbjct: 47 FDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYP 106
Query: 265 TAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
+ +S D TIR + + GH V+ P ED +S SLD+T+R+WD+
Sbjct: 107 WIVSASD--DQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
Score = 36.7 bits (81), Expect = 0.009
Identities = 23/129 (17%), Positives = 57/129 (44%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKN 264
F ++++ + F P +++ I ++D GT + + + V +HF +++
Sbjct: 5 FETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQP 64
Query: 265 TAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
+ D I+ + +++ + GH + T+ +S S D+T+R+W+
Sbjct: 65 LFVSGGD--DYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122
Query: 445 RSPNCQGLM 471
+S C ++
Sbjct: 123 QSRTCVSVL 131
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
GH V ++ +D +S S DK++R+WD
Sbjct: 246 GHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD 276
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 47.6 bits (108), Expect = 5e-06
Identities = 31/113 (27%), Positives = 49/113 (43%)
Frame = +1
Query: 121 FSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDT 300
FSP G SCS D I+ ++ + + VD H I + + D T
Sbjct: 468 FSPFGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDW----HPNCNYIATGSS-DKT 522
Query: 301 IRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
+R + + +R F GH V+++ +SP SG D T+ +WDL + C
Sbjct: 523 VRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARC 575
Score = 37.1 bits (82), Expect = 0.007
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCEKGTQM-ITVNSKKYGVDLIHFTHAKNTAIHSS 282
++ +D+ PN + + S D + ++D + G + I + + + L + A S
Sbjct: 502 LSDVDWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMA---S 558
Query: 283 TKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
D TI L + I GH V ++ S SGS D T++LWD+ S
Sbjct: 559 GDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVTS 614
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
S+ D TIR S N + + GH V SP F S S D+T R+W +
Sbjct: 435 SSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTARIWSM 489
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
GH+ V + SP D LS S D T+RLW +
Sbjct: 416 GHSGPVYSATFSPPGDFVLSSSADTTIRLWSTK 448
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 47.6 bits (108), Expect = 5e-06
Identities = 30/104 (28%), Positives = 50/104 (48%)
Frame = +1
Query: 160 DDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIR 339
D I I+D EKGT + NS K V + + + + S +K +D I + + ++ R
Sbjct: 85 DGSIRIWDTEKGTCEVNFNSHKGAVTALRYNKV-GSMLASGSKDNDIILWDVVGESGLFR 143
Query: 340 YFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLM 471
GH +V + +S S DK LR+WDL + +C ++
Sbjct: 144 -LRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLETQHCMQIV 186
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/109 (22%), Positives = 54/109 (49%)
Frame = +1
Query: 115 IDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVD 294
ID S +GE +++ S+D + I+ + G ++ + +G ++ +NT S D
Sbjct: 588 IDISSDGELIVTGSQDKNLKIWGLDFGDCHKSIFA--HGDSVMGVKFVRNTHYLFSIGKD 645
Query: 295 DTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
++Y +++ GH ++ + +S D ++GS D+++R WD
Sbjct: 646 RLVKYWDADKFEHLLTLEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWD 694
Score = 39.5 bits (88), Expect = 0.001
Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 9/162 (5%)
Frame = +1
Query: 34 MMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCE------KG 195
+++++D + + KV +V + + I SI PN ++ S D ++ ++ + K
Sbjct: 468 VLEIID-IGSATKVEEV-KAHGGTIWSITPIPNDSGFVTVSADHEVKFWEYQVKQKSGKA 525
Query: 196 TQMITVN---SKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKV 366
T+ +TV+ S K D++ + + + +D T++ + K+ GH V
Sbjct: 526 TKKLTVSNVKSMKMNDDVLAVAISPDAKHIAVALLDSTVKVFYMDSLKFYLSLYGHKLPV 585
Query: 367 VTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSGRPV 492
+ + +S + ++GS DK L++W L +C + G V
Sbjct: 586 MCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKSIFAHGDSV 627
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 46.8 bits (106), Expect = 9e-06
Identities = 29/132 (21%), Positives = 56/132 (42%)
Frame = +1
Query: 64 SFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLI 243
+ K V + INS+ + N + + SED I+ ++T+ K + +
Sbjct: 488 NLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKGHKRRIFSV 547
Query: 244 HFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDK 423
F+ + +S D T++ ++ D ++ F GHT V+ F+S D
Sbjct: 548 EFSTVDQCVMTASG--DKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFVSCGADG 605
Query: 424 TLRLWDLRSPNC 459
L+LW++ + C
Sbjct: 606 LLKLWNVNTSEC 617
Score = 41.9 bits (94), Expect = 3e-04
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 8/172 (4%)
Frame = +1
Query: 25 CIKMMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQM 204
C ++ +VD S K +D + ++ SP+ + L S QI ++D E +
Sbjct: 38 CGDVINIVDSTDSSVK--STIEGESDTLTALALSPDDKLLFSAGHSRQIRVWDLET-LKC 94
Query: 205 ITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLS 384
I G + HA + ++ D + + YF GH V ++
Sbjct: 95 IRSWKGHEGPVMGMACHASGGLL-ATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSILFH 153
Query: 385 PV--EDTFLSGSLDKTLRLWDLRSPN----CQGLM--HLSGRPVAAYDPEGL 516
P ++ +SGS D T+R+WDL + N C +M H S A +GL
Sbjct: 154 PDSNKNILISGSDDATVRVWDLNAKNTEKKCLAIMEKHFSAVTSIALSEDGL 205
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Frame = +1
Query: 349 GHTKKVVTM--CLSPVEDTFL-SGSLDKTLRLWDLRSPNCQGL 468
GH + V+++ C+S + + +GS DKT+RLW+ S +C G+
Sbjct: 399 GHKEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNATSKSCIGV 441
Score = 30.7 bits (66), Expect = 0.62
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +1
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTF-LSGSLDKTLRLW 438
N I + +K D T+R + I GH ++ + + +F +SGS D+TL++W
Sbjct: 416 NVLIVTGSK-DKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVW 474
Query: 439 DLR--SPNCQGLMHLSGRP-VAAYDPE 510
L S + + ++L R VAA+D +
Sbjct: 475 SLDGISEDSEEPINLKTRSVVAAHDKD 501
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 46.8 bits (106), Expect = 9e-06
Identities = 32/139 (23%), Positives = 64/139 (46%)
Frame = +1
Query: 100 DKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHS 279
D ++ + FS +G+ L S D + I+D GT ++ G++ + + H + + +
Sbjct: 114 DSVSCLAFSYDGQLLASGGLDGVVQIFDASSGTLKCVLDGPGAGIEWVRW-HPRGHIVLA 172
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
++ D ++ + Y+ F GH V +P +GS D +L +W+ ++ C
Sbjct: 173 GSE-DCSLWMWNADKEAYLNMFSGHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKT--C 229
Query: 460 QGLMHLSGRPVAAYDPEGL 516
+ + + G P Y EGL
Sbjct: 230 ESIHIVKGHP---YHTEGL 245
Score = 42.7 bits (96), Expect = 1e-04
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Frame = +1
Query: 118 DFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVD-LIHFTHAKNTAIHSSTKVD 294
DF+P+G+ + + S+D +++++ + + V Y + L N+++ S D
Sbjct: 204 DFTPDGKLICTGSDDASLIVWNPKTCESIHIVKGHPYHTEGLTCLDINSNSSLAISGSKD 263
Query: 295 DTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTF---LSGSLDKTLRLWDLR 447
++ +++ K + HT V + SP T +G +DK L +WDL+
Sbjct: 264 GSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIPLAATGGMDKKLIIWDLQ 317
Score = 37.5 bits (83), Expect = 0.005
Identities = 28/137 (20%), Positives = 56/137 (40%)
Frame = +1
Query: 64 SFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLI 243
S + K +T+ + +D + N IS S+D + I + G + ++NS V+ +
Sbjct: 231 SIHIVKGHPYHTEGLTCLDINSNSSLAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECV 290
Query: 244 HFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDK 423
F+ + T ++T D + + R+ H + V ++ +G +
Sbjct: 291 KFSPSSATIPLAATGGMDKKLIIWDLQHSTPRFICEHEEGVTSLTWIGTSKYLATGCANG 350
Query: 424 TLRLWDLRSPNCQGLMH 474
T+ +WD NC H
Sbjct: 351 TVSIWDSLLGNCVHTYH 367
Score = 32.3 bits (70), Expect = 0.20
Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETL---ISCSEDDQIVIYDCEKGTQMITVNSKKYGVDL 240
KV +TD + + FSP+ T+ + D +++I+D + T ++ L
Sbjct: 275 KVVSSLNSHTDSVECVKFSPSSATIPLAATGGMDKKLIIWDLQHSTPRFICEHEEGVTSL 334
Query: 241 IHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLD 420
+K A + + T+ + + GH V + +S D +S S+D
Sbjct: 335 TWIGTSKYLATGCA---NGTVSIWDSLLGNCVHTYHGHQDAVQAISVSTNTDFIVSVSVD 391
Query: 421 KTLRLWD 441
T R+++
Sbjct: 392 NTARVFE 398
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/125 (21%), Positives = 57/125 (45%)
Frame = +1
Query: 130 NGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRY 309
+GE +++ + D + ++D T M + ++ + +T I ++ D
Sbjct: 949 SGERVLTAAHDGTVKMWDVR--TDMCVATVGRCSSAILSLEYDDSTGILAAAGRDTVANI 1006
Query: 310 LSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSGRP 489
+ K + GHTK + ++ + VEDT ++GS D T R+W + +C ++ P
Sbjct: 1007 WDIRSGKQMHKLKGHTKWIRSIRM--VEDTLITGSDDWTARVWSVSRGSCDAVLACHAGP 1064
Query: 490 VAAYD 504
V + +
Sbjct: 1065 VQSVE 1069
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +1
Query: 277 SSTKVDDTIRYLSLHDNKYIRY----FPGHTKKVVTMCLSPVE-DTFLSGSLDKTLRLWD 441
+S VD T R ++ + + + GHT V +C P D + S DK++RLWD
Sbjct: 36 ASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWD 95
Query: 442 LRSPNCQGLMHLSGRPV-AAYDPEG 513
RS C + LSG + Y P+G
Sbjct: 96 ARSGKCTQQVELSGENINITYKPDG 120
Score = 35.9 bits (79), Expect = 0.017
Identities = 33/143 (23%), Positives = 56/143 (39%)
Frame = +1
Query: 31 KMMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMIT 210
K ++L D RS K + + + IN I + P+G + + DD++ I D K +
Sbjct: 89 KSVRLWD--ARSGKCTQQVELSGENIN-ITYKPDGTHVAVGNRDDELTILDVRKFKPL-- 143
Query: 211 VNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPV 390
+ +K+ ++ T T+ LS K + HT + + P
Sbjct: 144 -HRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPSLKPLDTLTAHTAGCYCIAIDPK 202
Query: 391 EDTFLSGSLDKTLRLWDLRSPNC 459
F GS D + LWD+ C
Sbjct: 203 GRYFAVGSADSLVSLWDISDMLC 225
Score = 35.5 bits (78), Expect = 0.022
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 292 DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
+ TI + SLH +Y GH KKV ++ + SGS+D+T R+W++
Sbjct: 3 ETTIPFKSLHSREY----QGHKKKVHSVAWNSNGTKLASGSVDQTARIWNI 49
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 44.8 bits (101), Expect = 4e-05
Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Frame = +1
Query: 61 RSFKVAKVFRENTDKINSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVD 237
+ + ++F ++ + + F+P T S S D I I++ T+++ + GV+
Sbjct: 130 KGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVN 189
Query: 238 LIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSL 417
+ + + + D T + ++ GHT V +C P ++GS
Sbjct: 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249
Query: 418 DKTLRLW 438
D T+R+W
Sbjct: 250 DGTVRIW 256
Score = 41.9 bits (94), Expect = 3e-04
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Frame = +1
Query: 79 KVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITV-NSKKYGVDLIHFTH 255
KVF ++D I + P ++S S+D I ++D EKG + + V + F +
Sbjct: 93 KVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTF-N 151
Query: 256 AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKV--VTMCLSPVEDTFLSGSLDKTL 429
K+T +S +D TI+ +L H K V V + ++GS D T
Sbjct: 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211
Query: 430 RLWDLRSPNC 459
++WD ++ +C
Sbjct: 212 KVWDYQTKSC 221
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 43.6 bits (98), Expect = 8e-05
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +1
Query: 229 GVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLS 408
G L+ + + + ++ D IR + K +R F GHT ++ +C S +S
Sbjct: 515 GCSLVKIVYHRVNGLLATVADDFVIRLYDVVTLKMVREFRGHTDRITDLCFSEDGKWVIS 574
Query: 409 GSLDKTLRLWDL 444
S+D +LR+WD+
Sbjct: 575 SSMDGSLRIWDV 586
Score = 34.7 bits (76), Expect = 0.038
Identities = 18/50 (36%), Positives = 32/50 (64%)
Frame = +1
Query: 34 MMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYD 183
+++L D V + K+ + FR +TD+I + FS +G+ +IS S D + I+D
Sbjct: 538 VIRLYDVV--TLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWD 585
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 43.6 bits (98), Expect = 8e-05
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Frame = +1
Query: 79 KVFRENTDKINSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
++F ++ + + F+P T S S D I I++ T+++ + GV+ + +
Sbjct: 136 QIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT 195
Query: 256 AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRL 435
+ + D T + ++ GHT V +C P ++GS D T+R+
Sbjct: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
Query: 436 W 438
W
Sbjct: 256 W 256
Score = 43.2 bits (97), Expect = 1e-04
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Frame = +1
Query: 73 VAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFT 252
+ K F + S F P + +++ ++D I +Y+ M V + D I
Sbjct: 49 ITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNT---MDKVKVFEAHSDYIRCV 105
Query: 253 HAKNTAIHSSTKVDDTIRYLSLHDNKYI--RYFPGHTKKVVTMCLSPVE-DTFLSGSLDK 423
T + + DD + L +N + + F GH+ V+ + +P + +TF S SLD+
Sbjct: 106 AVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDR 165
Query: 424 TLRLWDLRSPN 456
T+++W+L SP+
Sbjct: 166 TIKIWNLGSPD 176
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 43.6 bits (98), Expect = 8e-05
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Frame = +1
Query: 79 KVFRENTDKINSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
++F ++ + + F+P T S S D I I++ T+++ + GV+ + +
Sbjct: 136 QIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT 195
Query: 256 AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRL 435
+ + D T + ++ GHT V +C P ++GS D T+R+
Sbjct: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
Query: 436 W 438
W
Sbjct: 256 W 256
Score = 43.2 bits (97), Expect = 1e-04
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Frame = +1
Query: 73 VAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFT 252
+ K F + S F P + +++ ++D I +Y+ M V + D I
Sbjct: 49 ITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNT---MDKVKVFEAHSDYIRCV 105
Query: 253 HAKNTAIHSSTKVDDTIRYLSLHDNKYI--RYFPGHTKKVVTMCLSPVE-DTFLSGSLDK 423
T + + DD + L +N + + F GH+ V+ + +P + +TF S SLD+
Sbjct: 106 AVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDR 165
Query: 424 TLRLWDLRSPN 456
T+++W+L SP+
Sbjct: 166 TIKIWNLGSPD 176
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 43.6 bits (98), Expect = 8e-05
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Frame = +1
Query: 79 KVFRENTDKINSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
++F ++ + + F+P T S S D I I++ T+++ + GV+ + +
Sbjct: 136 QIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT 195
Query: 256 AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRL 435
+ + D T + ++ GHT V +C P ++GS D T+R+
Sbjct: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
Query: 436 W 438
W
Sbjct: 256 W 256
Score = 43.2 bits (97), Expect = 1e-04
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Frame = +1
Query: 73 VAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFT 252
+ K F + S F P + +++ ++D I +Y+ M V + D I
Sbjct: 49 ITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNT---MDKVKVFEAHSDYIRCV 105
Query: 253 HAKNTAIHSSTKVDDTIRYLSLHDNKYI--RYFPGHTKKVVTMCLSPVE-DTFLSGSLDK 423
T + + DD + L +N + + F GH+ V+ + +P + +TF S SLD+
Sbjct: 106 AVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDR 165
Query: 424 TLRLWDLRSPN 456
T+++W+L SP+
Sbjct: 166 TIKIWNLGSPD 176
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 43.6 bits (98), Expect = 8e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
GH K + ++C + + FL+GSLDKT +LWD+R+
Sbjct: 191 GHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRT 224
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 343 FPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
+ GH V +S ++GS D+T +LWD++S
Sbjct: 48 YRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKS 83
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 43.6 bits (98), Expect = 8e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
GH K + ++C + + FL+GSLDKT +LWD+R+
Sbjct: 191 GHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRT 224
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 343 FPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
+ GH V +S ++GS D+T +LWD++S
Sbjct: 48 YRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKS 83
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 43.6 bits (98), Expect = 8e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
GH K + ++C + + FL+GSLDKT +LWD+R+
Sbjct: 191 GHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRT 224
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 343 FPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
+ GH V +S ++GS D+T +LWD++S
Sbjct: 48 YRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKS 83
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 43.6 bits (98), Expect = 8e-05
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 1/142 (0%)
Frame = +1
Query: 91 ENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTA 270
+++ ++ ++ P + +S S D YD G+ + V+ VD +
Sbjct: 307 DHSAEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPDGL 366
Query: 271 IHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
I + ++ + + F GHT +V + S FL+ + + +RLWDLR
Sbjct: 367 ILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSE-NGYFLATAAEDGVRLWDLRK 425
Query: 451 -PNCQGLMHLSGRPVAAYDPEG 513
N + + V +DP G
Sbjct: 426 LRNFKSFLSADANSV-EFDPSG 446
Score = 40.7 bits (91), Expect = 6e-04
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 7/151 (4%)
Frame = +1
Query: 88 RENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNT 267
+ N I S+D + + + + D V++D G + T+ V + F +
Sbjct: 219 KTNKPGICSMDILHSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDL 278
Query: 268 AIHSSTKVDDTIR-YLSLHDNKYIRYFP--GHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
+ +S D T+R + + D Y + H+ +V + + P F+S SLD T +
Sbjct: 279 VLTASA--DKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGTWCFY 336
Query: 439 DLRSPNCQGLMHLSGRPV----AAYDPEGLI 519
DL S +C + + V AA+ P+GLI
Sbjct: 337 DLSSGSCLAQVSDDSKNVDYTAAAFHPDGLI 367
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 43.6 bits (98), Expect = 8e-05
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 1/142 (0%)
Frame = +1
Query: 91 ENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTA 270
+++ ++ ++ P + +S S D YD G+ + V+ VD +
Sbjct: 307 DHSAEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPDGL 366
Query: 271 IHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
I + ++ + + F GHT +V + S FL+ + + +RLWDLR
Sbjct: 367 ILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSE-NGYFLATAAEDGVRLWDLRK 425
Query: 451 -PNCQGLMHLSGRPVAAYDPEG 513
N + + V +DP G
Sbjct: 426 LRNFKSFLSADANSV-EFDPSG 446
Score = 40.7 bits (91), Expect = 6e-04
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 7/151 (4%)
Frame = +1
Query: 88 RENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNT 267
+ N I S+D + + + + D V++D G + T+ V + F +
Sbjct: 219 KTNKPGICSMDILHSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDL 278
Query: 268 AIHSSTKVDDTIR-YLSLHDNKYIRYFP--GHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
+ +S D T+R + + D Y + H+ +V + + P F+S SLD T +
Sbjct: 279 VLTASA--DKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGTWCFY 336
Query: 439 DLRSPNCQGLMHLSGRPV----AAYDPEGLI 519
DL S +C + + V AA+ P+GLI
Sbjct: 337 DLSSGSCLAQVSDDSKNVDYTAAAFHPDGLI 367
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 328 KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLM--HLSGRPVAAY 501
K + GHT VV + SP + SGSLD T+ +W++R+ C ++ HLS +
Sbjct: 109 KAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTW 168
Query: 502 DPEG 513
DP G
Sbjct: 169 DPIG 172
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/138 (17%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNS---------- 219
++ R++ +N + ++ N + S S+D I I++ + G+ S
Sbjct: 50 RLLATLRDHFGSVNCVRWAKNSRYVASGSDDQVIQIHERKPGSGTTEFGSGEAPDVENWK 109
Query: 220 -----KKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLS 384
+ + D++ + + ++ +S +D+T+ ++ GH V +
Sbjct: 110 AVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTWD 169
Query: 385 PVEDTFLSGSLDKTLRLW 438
P+ S S DKT+ +W
Sbjct: 170 PIGSFIASQSDDKTVIIW 187
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Frame = +1
Query: 82 VFRENTDKINSIDFS-PNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH- 255
+ R +TD + +I N + +++ S D I+++ K + V ++ HF
Sbjct: 10 IMRAHTDIVTAIATPIDNSDIIVTASRDKSIILWKLTKDDKSYGVAQRRL-TGHSHFVED 68
Query: 256 ---AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKT 426
+ + S D +R L + R F GHTK V+++ S +S S D+T
Sbjct: 69 VVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRT 128
Query: 427 LRLWD 441
++LW+
Sbjct: 129 IKLWN 133
Score = 39.5 bits (88), Expect = 0.001
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNS---KKYGVDLIHFTH 255
F +T + S+ FS + ++S S D I +++ G T++ K V + F+
Sbjct: 101 FVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNT-LGECKYTISEGDGHKEWVSCVRFSP 159
Query: 256 AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRL 435
S D T++ +L + K GH+ + T+ +SP SG D + L
Sbjct: 160 NTLVPTIVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILL 219
Query: 436 WDL 444
WDL
Sbjct: 220 WDL 222
Score = 34.7 bits (76), Expect = 0.038
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSST 285
+ + S +G+ +S S D ++ ++D G V + F+ N I S++
Sbjct: 66 VEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFS-TDNRQIVSAS 124
Query: 286 KVDDTIR-YLSLHDNKY-IRYFPGHTKKVVTMCLSP--VEDTFLSGSLDKTLRLWDLRSP 453
+ D TI+ + +L + KY I GH + V + SP + T +S S DKT+++W+L+
Sbjct: 125 R-DRTIKLWNTLGECKYTISEGDGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQ-- 181
Query: 454 NCQ 462
NC+
Sbjct: 182 NCK 184
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 337 RYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
R GH+ V + LS LSGS D LRLWDL
Sbjct: 57 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 92
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 292 DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPV-EDTFLSGSLDKTLRLWDLR 447
D TI+ + +NK GHT V +MC P D +SGS D LWDLR
Sbjct: 149 DQTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDLR 201
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSG 483
GH K V + L D +GS D+TLR+WD S C G++ L G
Sbjct: 149 GHEKLVSGIALPSGSDKLYTGSKDETLRVWDCASGQCTGVLKLGG 193
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
GHT VVT+ + + SGS+DKT+++W L + C
Sbjct: 272 GHTLAVVTLYVGA--NRLYSGSMDKTIKVWSLDNLQC 306
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
S +D TI+ SL + + I+ H+ V M L + LS SLD T+++W
Sbjct: 289 SGSMDKTIKVWSLDNLQCIQTLTDHSS--VVMSLICWDQFLLSCSLDNTVKIW 339
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 41.9 bits (94), Expect = 3e-04
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSST 285
I S+ FS +G +++ S DD I +YD E + + V+ + F I S +
Sbjct: 232 IFSVKFSTDGREVVAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGS 291
Query: 286 KVDDTI-----RYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
DD + R + +K GH + V + F+S D+T++LWD+R
Sbjct: 292 --DDNLCKVWDRRCFIGRDKPAGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWDIR 348
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 41.9 bits (94), Expect = 3e-04
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLI-SCSEDDQIVIYDCEKGTQMITVNSKKYGV 234
V + K K E++ +NS + G LI S S+D ++D + + T K Y +
Sbjct: 125 VETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDK-YQI 183
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
+ F+ A + VD+ ++ L + GH + M LSP L+
Sbjct: 184 TAVSFSDAADKIFTGG--VDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNG 241
Query: 415 LDKTLRLWDLR 447
+D L +WD+R
Sbjct: 242 MDNKLCVWDMR 252
Score = 33.5 bits (73), Expect = 0.088
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +1
Query: 334 IRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSGRPVAAYD 504
I GH V TM +P SGS D+ + LW + +C+ M L G A D
Sbjct: 46 IMLLSGHPSAVYTMKFNPAGTLIASGSHDREIFLWRVHG-DCKNFMVLKGHKNAILD 101
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 6/135 (4%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCE------KGTQMITVNS 219
+R + + D I + SP+G L++ D+++ ++D + ++ +
Sbjct: 209 LRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWDMRPYAPQNRCVKIFEGHQ 268
Query: 220 KKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDT 399
+ +L+ + + + ++ D + + I PGHT V P E
Sbjct: 269 HNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVFHPTEPI 328
Query: 400 FLSGSLDKTLRLWDL 444
S S DK + L ++
Sbjct: 329 IGSCSSDKNIYLGEI 343
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 41.9 bits (94), Expect = 3e-04
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +1
Query: 106 INSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSS 282
+ SIDF P E L SC ++ I +D V + K + F + ++
Sbjct: 596 VMSIDFHPKKTELLCSCDSNNDIRFWDINASC----VRAVKGASTQVRFQPRTGQFLAAA 651
Query: 283 TKVDDTIRYLSL-HDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
+ ++T+ + ++NK + F GH+ V ++C SP + S S D ++LW L S +C
Sbjct: 652 S--ENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSED-AVKLWSLSSGDC 708
Score = 36.3 bits (80), Expect = 0.012
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDC-EKGTQMITVNSKKYGV 234
+ + +V E+ I + F PN L + S D I I+D + G + T++ V
Sbjct: 537 METLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPV 596
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
I F H K T + S ++ IR+ ++ + +R G + +V P FL+ +
Sbjct: 597 MSIDF-HPKKTELLCSCDSNNDIRFWDINAS-CVRAVKGASTQV---RFQPRTGQFLAAA 651
Query: 415 LDKTLRLWDLRSPN 456
+ T+ ++D+ + N
Sbjct: 652 SENTVSIFDIENNN 665
Score = 36.3 bits (80), Expect = 0.012
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKG--TQMITVNSKKYGVDLI 243
K +F+ ++ ++S+ +SPNGE + S SE D + ++ G ++ + K+ +
Sbjct: 666 KRVNIFKGHSSNVHSVCWSPNGELVASVSE-DAVKLWSLSSGDCIHELSNSGNKFHSVVF 724
Query: 244 HFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDK 423
H ++ I I + +NK + GH + + SP S S DK
Sbjct: 725 HPSYPDLLVIGGY----QAIELWNTMENKCMT-VAGHECVISALAQSPSTGVVASASHDK 779
Query: 424 TLRLW 438
++++W
Sbjct: 780 SVKIW 784
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 41.9 bits (94), Expect = 3e-04
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +1
Query: 106 INSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSS 282
+ SIDF P E L SC ++ I +D V + K + F + ++
Sbjct: 598 VMSIDFHPKKTELLCSCDSNNDIRFWDINASC----VRAVKGASTQVRFQPRTGQFLAAA 653
Query: 283 TKVDDTIRYLSL-HDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
+ ++T+ + ++NK + F GH+ V ++C SP + S S D ++LW L S +C
Sbjct: 654 S--ENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSED-AVKLWSLSSGDC 710
Score = 36.3 bits (80), Expect = 0.012
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDC-EKGTQMITVNSKKYGV 234
+ + +V E+ I + F PN L + S D I I+D + G + T++ V
Sbjct: 539 METLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPV 598
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
I F H K T + S ++ IR+ ++ + +R G + +V P FL+ +
Sbjct: 599 MSIDF-HPKKTELLCSCDSNNDIRFWDINAS-CVRAVKGASTQV---RFQPRTGQFLAAA 653
Query: 415 LDKTLRLWDLRSPN 456
+ T+ ++D+ + N
Sbjct: 654 SENTVSIFDIENNN 667
Score = 36.3 bits (80), Expect = 0.012
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKG--TQMITVNSKKYGVDLI 243
K +F+ ++ ++S+ +SPNGE + S SE D + ++ G ++ + K+ +
Sbjct: 668 KRVNIFKGHSSNVHSVCWSPNGELVASVSE-DAVKLWSLSSGDCIHELSNSGNKFHSVVF 726
Query: 244 HFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDK 423
H ++ I I + +NK + GH + + SP S S DK
Sbjct: 727 HPSYPDLLVIGGY----QAIELWNTMENKCMT-VAGHECVISALAQSPSTGVVASASHDK 781
Query: 424 TLRLW 438
++++W
Sbjct: 782 SVKIW 786
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 41.9 bits (94), Expect = 3e-04
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +1
Query: 106 INSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSS 282
+ SIDF P E L SC ++ I +D V + K + F + ++
Sbjct: 598 VMSIDFHPKKTELLCSCDSNNDIRFWDINASC----VRAVKGASTQVRFQPRTGQFLAAA 653
Query: 283 TKVDDTIRYLSL-HDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
+ ++T+ + ++NK + F GH+ V ++C SP + S S D ++LW L S +C
Sbjct: 654 S--ENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSED-AVKLWSLSSGDC 710
Score = 36.3 bits (80), Expect = 0.012
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDC-EKGTQMITVNSKKYGV 234
+ + +V E+ I + F PN L + S D I I+D + G + T++ V
Sbjct: 539 METLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPV 598
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
I F H K T + S ++ IR+ ++ + +R G + +V P FL+ +
Sbjct: 599 MSIDF-HPKKTELLCSCDSNNDIRFWDINAS-CVRAVKGASTQV---RFQPRTGQFLAAA 653
Query: 415 LDKTLRLWDLRSPN 456
+ T+ ++D+ + N
Sbjct: 654 SENTVSIFDIENNN 667
Score = 36.3 bits (80), Expect = 0.012
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKG--TQMITVNSKKYGVDLI 243
K +F+ ++ ++S+ +SPNGE + S SE D + ++ G ++ + K+ +
Sbjct: 668 KRVNIFKGHSSNVHSVCWSPNGELVASVSE-DAVKLWSLSSGDCIHELSNSGNKFHSVVF 726
Query: 244 HFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDK 423
H ++ I I + +NK + GH + + SP S S DK
Sbjct: 727 HPSYPDLLVIGGY----QAIELWNTMENKCMT-VAGHECVISALAQSPSTGVVASASHDK 781
Query: 424 TLRLW 438
++++W
Sbjct: 782 SVKIW 786
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 41.9 bits (94), Expect = 3e-04
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +1
Query: 106 INSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSS 282
+ SIDF P E L SC ++ I +D V + K + F + ++
Sbjct: 598 VMSIDFHPKKTELLCSCDSNNDIRFWDINASC----VRAVKGASTQVRFQPRTGQFLAAA 653
Query: 283 TKVDDTIRYLSL-HDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
+ ++T+ + ++NK + F GH+ V ++C SP + S S D ++LW L S +C
Sbjct: 654 S--ENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSED-AVKLWSLSSGDC 710
Score = 36.3 bits (80), Expect = 0.012
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDC-EKGTQMITVNSKKYGV 234
+ + +V E+ I + F PN L + S D I I+D + G + T++ V
Sbjct: 539 METLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPV 598
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
I F H K T + S ++ IR+ ++ + +R G + +V P FL+ +
Sbjct: 599 MSIDF-HPKKTELLCSCDSNNDIRFWDINAS-CVRAVKGASTQV---RFQPRTGQFLAAA 653
Query: 415 LDKTLRLWDLRSPN 456
+ T+ ++D+ + N
Sbjct: 654 SENTVSIFDIENNN 667
Score = 36.3 bits (80), Expect = 0.012
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKG--TQMITVNSKKYGVDLI 243
K +F+ ++ ++S+ +SPNGE + S SE D + ++ G ++ + K+ +
Sbjct: 668 KRVNIFKGHSSNVHSVCWSPNGELVASVSE-DAVKLWSLSSGDCIHELSNSGNKFHSVVF 726
Query: 244 HFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDK 423
H ++ I I + +NK + GH + + SP S S DK
Sbjct: 727 HPSYPDLLVIGGY----QAIELWNTMENKCMT-VAGHECVISALAQSPSTGVVASASHDK 781
Query: 424 TLRLW 438
++++W
Sbjct: 782 SVKIW 786
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 41.9 bits (94), Expect = 3e-04
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +1
Query: 106 INSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSS 282
+ SIDF P E L SC ++ I +D V + K + F + ++
Sbjct: 598 VMSIDFHPKKTELLCSCDSNNDIRFWDINASC----VRAVKGASTQVRFQPRTGQFLAAA 653
Query: 283 TKVDDTIRYLSL-HDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
+ ++T+ + ++NK + F GH+ V ++C SP + S S D ++LW L S +C
Sbjct: 654 S--ENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSED-AVKLWSLSSGDC 710
Score = 36.3 bits (80), Expect = 0.012
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDC-EKGTQMITVNSKKYGV 234
+ + +V E+ I + F PN L + S D I I+D + G + T++ V
Sbjct: 539 METLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPV 598
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
I F H K T + S ++ IR+ ++ + +R G + +V P FL+ +
Sbjct: 599 MSIDF-HPKKTELLCSCDSNNDIRFWDINAS-CVRAVKGASTQV---RFQPRTGQFLAAA 653
Query: 415 LDKTLRLWDLRSPN 456
+ T+ ++D+ + N
Sbjct: 654 SENTVSIFDIENNN 667
Score = 36.3 bits (80), Expect = 0.012
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKG--TQMITVNSKKYGVDLI 243
K +F+ ++ ++S+ +SPNGE + S SE D + ++ G ++ + K+ +
Sbjct: 668 KRVNIFKGHSSNVHSVCWSPNGELVASVSE-DAVKLWSLSSGDCIHELSNSGNKFHSVVF 726
Query: 244 HFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDK 423
H ++ I I + +NK + GH + + SP S S DK
Sbjct: 727 HPSYPDLLVIGGY----QAIELWNTMENKCMT-VAGHECVISALAQSPSTGVVASASHDK 781
Query: 424 TLRLW 438
++++W
Sbjct: 782 SVKIW 786
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 41.9 bits (94), Expect = 3e-04
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Frame = +1
Query: 88 RENTDKINSIDFSPNGETLI-SCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKN 264
+E+ ++ SID+S TL+ S S+D + ++ +G + T+ +K + + F
Sbjct: 573 KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA-NICCVQFPSETG 631
Query: 265 TAIHSSTKVDDTIRYLSLHDNKY-IRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
++ + D + Y L + K + GH K V+ T +S S D TL+LWD
Sbjct: 632 RSL-AFGSADHKVYYYDLRNPKLPLCTMIGH-HKTVSYVRFVDSSTLVSSSTDNTLKLWD 689
Query: 442 L 444
L
Sbjct: 690 L 690
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 41.9 bits (94), Expect = 3e-04
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Frame = +1
Query: 88 RENTDKINSIDFSPNGETLI-SCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKN 264
+E+ ++ SID+S TL+ S S+D + ++ +G + T+ +K + + F
Sbjct: 573 KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA-NICCVQFPSETG 631
Query: 265 TAIHSSTKVDDTIRYLSLHDNKY-IRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
++ + D + Y L + K + GH K V+ T +S S D TL+LWD
Sbjct: 632 RSL-AFGSADHKVYYYDLRNPKLPLCTMIGH-HKTVSYVRFVDSSTLVSSSTDNTLKLWD 689
Query: 442 L 444
L
Sbjct: 690 L 690
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 41.5 bits (93), Expect = 3e-04
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 14/153 (9%)
Frame = +1
Query: 67 FKVAKVFRE-NTDKINSIDFSPNGETLISCSEDDQIVIY----------DCEKGTQMITV 213
FK + F + D IN++ S NG+ + + S D +I ++ K + + +
Sbjct: 197 FKCLESFTNAHDDAINAVALSENGD-IYTGSSDQRIKVWRKNINEENVKKKRKHSLVAIL 255
Query: 214 NSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNK---YIRYFPGHTKKVVTMCLS 384
+ G++ + + + +HS D +I D + GHT+ V +CL+
Sbjct: 256 SEHNSGINALALSGTNGSLLHSGGS-DGSILVWERDDGGDIVVVGMLRGHTESV--LCLA 312
Query: 385 PVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSG 483
V D SGS DKT+RLW + + L L G
Sbjct: 313 VVSDILCSGSADKTVRLWKCSAKDYSCLAMLEG 345
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 41.5 bits (93), Expect = 3e-04
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Frame = +1
Query: 79 KVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITV-NSKKYGVDLIHFTH 255
KVF + D I + P ++S S+D I ++D EKG + + V + F +
Sbjct: 93 KVFEAHADYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTF-N 151
Query: 256 AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKV--VTMCLSPVEDTFLSGSLDKTL 429
K+T +S +D TI+ +L H K V V + ++GS D T
Sbjct: 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTA 211
Query: 430 RLWDLRSPNCQGLM--HLSGRPVAAYDPE 510
++WD ++ +C + H ++ PE
Sbjct: 212 KVWDYQTKSCVQTLEGHTHNVSAVSFHPE 240
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Frame = +1
Query: 79 KVFRENTDKINSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
++F ++ + + F+P T S S D I I++ T+++ GV+ + +
Sbjct: 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFT 195
Query: 256 AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRL 435
+ + D T + ++ GHT V + P ++GS D T+R+
Sbjct: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRI 255
Query: 436 W 438
W
Sbjct: 256 W 256
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 41.5 bits (93), Expect = 3e-04
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Frame = +1
Query: 88 RENTDKINSIDFS-PNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH--- 255
R +TD + +I N + ++S S D I+++ K + V ++ HF
Sbjct: 12 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVV 70
Query: 256 -AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLR 432
+ + S D +R L R F GHTK V+++ S +S S D+T++
Sbjct: 71 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 130
Query: 433 LWD 441
LW+
Sbjct: 131 LWN 133
Score = 39.9 bits (89), Expect = 0.001
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYG----VDLIHFT 252
F +T + S+ FS + ++S S D I +++ G T++ G V + F+
Sbjct: 101 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFS 159
Query: 253 HAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLR 432
S D T++ +L + K GHT V T+ +SP SG D +
Sbjct: 160 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 219
Query: 433 LWDL 444
LWDL
Sbjct: 220 LWDL 223
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 337 RYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
R GH+ V + LS LSGS D LRLWDL
Sbjct: 57 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 92
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 41.1 bits (92), Expect = 4e-04
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +1
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDT-FLSG 411
D++ + +K+ + SS+ +D T+R L ++ F H+ V + +PV+D F+SG
Sbjct: 470 DVLDLSWSKSQHLLSSS-MDKTVRLWDLSSKTCLKVF-SHSDYVTCIQFNPVDDNYFISG 527
Query: 412 SLDKTLRLWDLRSPNCQGLMHLSGRPVAA-YDPEG 513
SLD +R+W + L AA Y P+G
Sbjct: 528 SLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDG 562
Score = 36.7 bits (81), Expect = 0.009
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 343 FPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
F GH V+ + S + LS S+DKT+RLWDL S C
Sbjct: 464 FVGHLDDVLDLSWSKSQH-LLSSSMDKTVRLWDLSSKTC 501
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 79 KVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQ 201
K FR NT+ S + NG+ L+S SED + +++ + ++
Sbjct: 639 KGFR-NTNSQISASLTSNGKFLVSASEDSNVYVWNYDSDSR 678
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 41.1 bits (92), Expect = 4e-04
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +1
Query: 142 LISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLH 321
L + S D I ++ E G T+ V+ + T K+ + + + IR ++
Sbjct: 8 LATASYDHTIRFWEAETGRCYRTIQYPDSHVNRLEITPDKH---YLAAACNPHIRLFDVN 64
Query: 322 DN--KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQ 462
N + + + HT V+ + SGS D T+++WDLR+P CQ
Sbjct: 65 SNSPQPVMTYDSHTNNVMAVGFQCDAKWMYSGSEDGTVKIWDLRAPGCQ 113
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 364 VVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
V T+ L P + +SG + +R+WDLR+ +C
Sbjct: 122 VNTVVLHPNQTELISGDQNGNIRVWDLRANSC 153
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +1
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDT-FLSGSLDKTLRLWDLRSPN 456
S+ +D T+R + ++ F H V + SPV++ FLSGSLD +R+W ++ +
Sbjct: 522 SSSMDKTVRLWDIETKTCLKLF-AHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRH 580
Query: 457 CQGLMHLSGRPVAA-YDPEG 513
L AA Y P+G
Sbjct: 581 VVEWSDLHEMVTAACYTPDG 600
Score = 33.5 bits (73), Expect = 0.088
Identities = 24/89 (26%), Positives = 41/89 (46%)
Frame = +1
Query: 193 GTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVT 372
G ++ V KK G + ++ I V +T+ S +K + GH ++
Sbjct: 458 GNEITVVEKKKKGKGS---SGRRHNHIPDYVHVPETVFSFS---DKPVCSLKGHLDAILD 511
Query: 373 MCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
+ S + LS S+DKT+RLWD+ + C
Sbjct: 512 LSWSKSQ-LLLSSSMDKTVRLWDIETKTC 539
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 41.1 bits (92), Expect = 4e-04
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGET-LISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAK 261
+ E+ + S+DFS + L+S S+D ++ ++ + +I ++ K + + +
Sbjct: 459 YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTRQEASVINIDMKA-NICCVKYNPGS 517
Query: 262 NTAIHSSTKVDDTIRYLSLHD-NKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
+ I + D I Y L + ++ + F GH KK V+ + S S D TLRLW
Sbjct: 518 SNYIAVGS-ADHHIHYYDLRNISQPLHVFSGH-KKAVSYVKFLSNNELASASTDSTLRLW 575
Query: 439 DLR 447
D++
Sbjct: 576 DVK 578
Score = 33.1 bits (72), Expect = 0.12
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +1
Query: 115 IDFSPNGETLISC-SEDDQIVIYDCEKGTQMITVNS-KKYGVDLIHFTHAKNTAIHSSTK 288
+ ++P I+ S D I YD +Q + V S K V + F A S
Sbjct: 511 VKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSNNELA---SAS 567
Query: 289 VDDTIRYLSLHDNKYIRYFPGHTKK 363
D T+R + DN +R F GHT +
Sbjct: 568 TDSTLRLWDVKDNLPVRTFRGHTNE 592
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 41.1 bits (92), Expect = 4e-04
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +1
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDT-FLSGSLDKTLRLWDL 444
S+ VD+T+R + ++ +R F H V + +PV+D F+SGS+D +R+WD+
Sbjct: 338 SSSVDETVRLWRVGCDECLRTFT-HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 328 KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
K + F GH +++ + S + LS S+D+T+RLW + C
Sbjct: 313 KPLHEFKGHIGEILDLSWSE-KGYLLSSSVDETVRLWRVGCDEC 355
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 41.1 bits (92), Expect = 4e-04
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +1
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDT-FLSGSLDKTLRLWDL 444
S+ VD+T+R + ++ +R F H V + +PV+D F+SGS+D +R+WD+
Sbjct: 338 SSSVDETVRLWRVGCDECLRTFT-HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 328 KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
K + F GH +++ + S + LS S+D+T+RLW + C
Sbjct: 313 KPLHEFKGHIGEILDLSWSE-KGYLLSSSVDETVRLWRVGCDEC 355
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 40.7 bits (91), Expect = 6e-04
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Frame = +1
Query: 94 NTDKINSIDFS-PNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH----A 258
+TD + +I N + +++ S D I+++ K + V ++ HF +
Sbjct: 14 HTDMVTAIATPVDNSDVIVTSSRDKSIILWKLTKEDKSYGVAQRRM-TGHSHFVQDVVLS 72
Query: 259 KNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
+ S D +R L + R F GHTK V+++ S +S S D+T++LW
Sbjct: 73 SDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLW 132
Query: 439 D 441
+
Sbjct: 133 N 133
Score = 40.7 bits (91), Expect = 6e-04
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDC--EKGTQMITVNSKKYGVDLIHFTHA 258
F +T + S+ FS + ++S S D I +++ E + + K V + F+
Sbjct: 101 FVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEADGHKEWVSCVRFSPN 160
Query: 259 KNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
S D T++ +L + K GH+ + T+ +SP SG D + LW
Sbjct: 161 TLVPTIVSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLW 220
Query: 439 DL 444
DL
Sbjct: 221 DL 222
Score = 35.9 bits (79), Expect = 0.017
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSST 285
+ + S +G+ +S S D ++ ++D G V + F+ N I S++
Sbjct: 66 VQDVVLSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAFS-TDNRQIVSAS 124
Query: 286 KVDDTIR-YLSLHDNKY-IRYFPGHTKKVVTMCLSP--VEDTFLSGSLDKTLRLWDLRSP 453
+ D TI+ + +L + KY I GH + V + SP + T +S S DKT+++W+L+
Sbjct: 125 R-DRTIKLWNTLGECKYTISEADGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQ-- 181
Query: 454 NCQGLMHLSG 483
NC+ L+G
Sbjct: 182 NCKLRNTLAG 191
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 337 RYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
R GH+ V + LS LSGS D LRLWDL
Sbjct: 57 RRMTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDL 92
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 40.3 bits (90), Expect = 8e-04
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +1
Query: 112 SIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKV 291
SI F N TL + +D + ++D GT + ++ + + TH + I +++
Sbjct: 236 SIVFEYNSGTLFTGGQDRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSS- 294
Query: 292 DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFL-SGSLDKTLRLWDLRSPNC 459
+ + + + GHT KV + +S + S + D+T++LWDL C
Sbjct: 295 -NNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYC 350
Score = 32.7 bits (71), Expect = 0.15
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 2/142 (1%)
Frame = +1
Query: 97 TDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIH 276
T N+I S +G T+ S D + ++D + G + V V + + N +
Sbjct: 357 TSNCNAICLSIDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILT 416
Query: 277 SST-KVDDTIRYLSLHDNKYIRYFPGH-TKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
S V + +L +R C+SP +D +GS D ++ +W L
Sbjct: 417 SGRDNVHNVFDTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGSVHVWSLSK 476
Query: 451 PNCQGLMHLSGRPVAAYDPEGL 516
N ++ P+ G+
Sbjct: 477 GNIVSILKEQTSPILCCSWSGI 498
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 40.3 bits (90), Expect = 8e-04
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSG 483
GH K V + L D + S D+T+R+WD S C G+++L G
Sbjct: 142 GHQKVVTGIALPSGSDKLYTASKDETVRIWDCASGQCTGVLNLGG 186
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
S +D++I+ SL + + I+ HT V M L + LS SLD T+++W
Sbjct: 282 SGAMDNSIKVWSLDNLQCIQTLTEHTS--VVMSLICWDQFLLSCSLDNTVKIW 332
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Frame = +1
Query: 103 KINSIDFSPNGETL-ISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHS 279
K+ + F+ G L C++ Q++++D T ++ + V+ + T++ ++ + +
Sbjct: 308 KLTTAVFNERGNWLTFGCAKLGQLLVWDWRTETYILKQQGHYFDVNCV--TYSPDSQLLA 365
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
+ D+ ++ ++ F HT V + + LS SLD T+R WD +
Sbjct: 366 TGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWDFK 421
Score = 36.3 bits (80), Expect = 0.012
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCE--KGTQMITVNSKKYGVDLIHFTHA 258
F E+T+ + ++ F + +L+S S D + +D + K + T + + V L
Sbjct: 387 FTEHTNAVTALHFMADNHSLLSASLDGTVRAWDFKRYKNYKTYTTPTPRQFVSLT--ADP 444
Query: 259 KNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
+ + T I S + GH V + SP+ S S D T+RLW
Sbjct: 445 SGDVVCAGTLDSFEIFVWSKKTGQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLW 504
Query: 439 DL 444
D+
Sbjct: 505 DV 506
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Frame = +1
Query: 103 KINSIDFSPNGETL-ISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHS 279
K+ + F+ G L C++ Q++++D T ++ + V+ + T++ ++ + +
Sbjct: 348 KLTTAVFNERGNWLTFGCAKLGQLLVWDWRTETYILKQQGHYFDVNCV--TYSPDSQLLA 405
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
+ D+ ++ ++ F HT V + + LS SLD T+R WD +
Sbjct: 406 TGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWDFK 461
Score = 36.3 bits (80), Expect = 0.012
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCE--KGTQMITVNSKKYGVDLIHFTHA 258
F E+T+ + ++ F + +L+S S D + +D + K + T + + V L
Sbjct: 427 FTEHTNAVTALHFMADNHSLLSASLDGTVRAWDFKRYKNYKTYTTPTPRQFVSLT--ADP 484
Query: 259 KNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
+ + T I S + GH V + SP+ S S D T+RLW
Sbjct: 485 SGDVVCAGTLDSFEIFVWSKKTGQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLW 544
Query: 439 DL 444
D+
Sbjct: 545 DV 546
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +1
Query: 280 STKVDDTIRYLSL-HDNKYIRYFPGHTKKVVTMCLSPVEDT-FLSGSLDKTLRLWDL 444
S+ VD+T+R + ++ IR F H V + +PV+D F+SGS+D +R+WD+
Sbjct: 379 SSSVDETVRLWRVGSSDECIRVF-SHKSFVTCVAFNPVDDNYFISGSIDGKVRIWDV 434
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 343 FPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL-RSPNC-QGLMHLSGRPVAAYDP 507
F GHT +++ + S + LS S+D+T+RLW + S C + H S A++P
Sbjct: 359 FRGHTGEILDLSWSE-KGFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNP 414
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 304 RYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
R L +N +I + H VT ++P +S SLDKTLR+WDLR
Sbjct: 437 RLFDLRENGFISSWRAHDG-YVTKLVAPESHLLVSSSLDKTLRIWDLR 483
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 39.5 bits (88), Expect = 0.001
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +1
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDT-FLSG 411
D++ +K+ + SS+ +D T+R +L ++ F H+ V + +PV+D F+SG
Sbjct: 515 DVLDLAWSKSQHLLSSS-MDKTVRLWNLSSQTCLKVF-SHSDYVTCIQFNPVDDRYFISG 572
Query: 412 SLDKTLRLWDLRSPNCQGLMHLSGRPVAA-YDPEG 513
SLD +R+W + L +A Y P+G
Sbjct: 573 SLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDG 607
Score = 35.9 bits (79), Expect = 0.017
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 343 FPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
F GH V+ + S + LS S+DKT+RLW+L S C
Sbjct: 509 FQGHVDDVLDLAWSKSQH-LLSSSMDKTVRLWNLSSQTC 546
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Frame = +1
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDT-FLSG 411
D++ + +KN + S++ VD+++R + + F H V ++ +PV+D F+SG
Sbjct: 358 DILDISWSKNNRLLSAS-VDNSVRLWQIGCEDCLGIF-SHNNYVTSVQFNPVDDDHFISG 415
Query: 412 SLDKTLRLWDLRSPNCQGLMHLSGRPV---AAYDPEG 513
S+D +R+W + CQ + R + Y P+G
Sbjct: 416 SIDGKVRIWS--ASQCQVVDWADARGIVTAVCYQPDG 450
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 325 NKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGL 468
+K + F GH+ ++ + S + LS S+D ++RLW + +C G+
Sbjct: 346 DKPLHEFLGHSGDILDISWSK-NNRLLSASVDNSVRLWQIGCEDCLGI 392
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Frame = +1
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDT-FLSG 411
D++ + +KN + S++ VD+++R + + F H V ++ +PV+D F+SG
Sbjct: 358 DILDISWSKNNRLLSAS-VDNSVRLWQIGCEDCLGIF-SHNNYVTSVQFNPVDDDHFISG 415
Query: 412 SLDKTLRLWDLRSPNCQGLMHLSGRPV---AAYDPEG 513
S+D +R+W + CQ + R + Y P+G
Sbjct: 416 SIDGKVRIWS--ASQCQVVDWADARGIVTAVCYQPDG 450
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 325 NKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGL 468
+K + F GH+ ++ + S + LS S+D ++RLW + +C G+
Sbjct: 346 DKPLHEFLGHSGDILDISWSK-NNRLLSASVDNSVRLWQIGCEDCLGI 392
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
GH + + ++C + + FL+GS DKT +LWD+R+
Sbjct: 218 GHKEAITSLCKAADDSHFLTGSHDKTAKLWDMRT 251
Score = 33.1 bits (72), Expect = 0.12
Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 12/131 (9%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMIT------VNSKKYGVD--- 237
+R ++ + D S + LI+ S D ++D + G ++ T S + V
Sbjct: 75 YRGHSGAVWCCDISRDSSRLITGSADQTAKLWDVKSGKELFTFKFGAPARSVDFSVGDHL 134
Query: 238 -LIHFTHAKNT--AIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLS 408
+I H T AIH +D + D+ + P KK+ P+ T +S
Sbjct: 135 AVITTDHFVGTSSAIHVKRIAEDPEDQVG--DSVLVLQSPDGKKKINRAVWGPLNQTIVS 192
Query: 409 GSLDKTLRLWD 441
G D +R+WD
Sbjct: 193 GGEDAAIRIWD 203
Score = 30.7 bits (66), Expect = 0.62
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = +1
Query: 196 TQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTM 375
T+M + K + L + +N + S D T + + + + GH+ V
Sbjct: 26 TRMRPILMKGHERPLTFLRYNRNGDLLFSCAKDHTPTVWFADNGERLGTYRGHSGAVWCC 85
Query: 376 CLSPVEDTFLSGSLDKTLRLWDLRS 450
+S ++GS D+T +LWD++S
Sbjct: 86 DISRDSSRLITGSADQTAKLWDVKS 110
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 103 KINSIDFSPNGETLISCSEDDQIVIYDCEKG 195
KIN + P +T++S ED I I+D E G
Sbjct: 177 KINRAVWGPLNQTIVSGGEDAAIRIWDAETG 207
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +1
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPV-EDTFLSG 411
D++ + +++ + SS+ +D T+R + ++ F H V + +P+ ED F+SG
Sbjct: 521 DVLDLSWSRSQLLLSSS-MDKTVRLWDIETQSCLKLF-AHNDYVTCVQFNPLDEDYFISG 578
Query: 412 SLDKTLRLWDLRSPNCQGLMHLSGRPVA-AYDPEG 513
SLD +R+W++ + L A Y P+G
Sbjct: 579 SLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDG 613
Score = 36.7 bits (81), Expect = 0.009
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +1
Query: 313 SLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
SL D K I F GH V+ + S + LS S+DKT+RLWD+ + +C
Sbjct: 506 SLSD-KPICSFTGHLDDVLDLSWSRSQ-LLLSSSMDKTVRLWDIETQSC 552
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/107 (23%), Positives = 42/107 (39%)
Frame = +1
Query: 142 LISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLH 321
L + S D I ++ G + V+ + T K + + S +
Sbjct: 13 LATASHDQTIRLWQARTGRCYFSFRYPDLHVNRLELTPEKGKLVAACNPHIRLFDLRSYN 72
Query: 322 DNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQ 462
+ +R F HTK V+ + SGS D ++++WDLR CQ
Sbjct: 73 PHIPVRNFVSHTKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRVRECQ 119
Score = 30.3 bits (65), Expect = 0.82
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Frame = +1
Query: 85 FRENTDKINSIDFSPN-GETLISCSEDDQIVIYDCEKGTQMITVN---SKKYGVDLIHFT 252
FR +N ++ +P G+ + +C+ I ++D I V S V + F
Sbjct: 36 FRYPDLHVNRLELTPEKGKLVAACNP--HIRLFDLRSYNPHIPVRNFVSHTKNVMAVGFQ 93
Query: 253 HAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLR 432
+ + S D +++ L + R F V T+ L P + +SG + +R
Sbjct: 94 YTGHMMYSGSE--DGSVKIWDLRVRECQREFRS-VSPVNTVVLHPNQTELISGDQNGNIR 150
Query: 433 LWDLRSPNC 459
+WDLR+ C
Sbjct: 151 VWDLRADLC 159
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 292 DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
D T++ +L K + GH + V S + ++ S D T RLW +R+
Sbjct: 238 DKTVKIWNLDGFKLEKVLTGHERWVWDCDFSMDGEYLVTASSDTTARLWSMRA 290
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 37.9 bits (84), Expect = 0.004
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGET-LISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAK 261
+ E+ + S+DFSP+ T +S S+D + ++ + + T+ S V + F+
Sbjct: 804 YTEHQKRAWSVDFSPSDPTKFVSGSDDCSVKLWSINEKRSLGTIWSPA-NVCCVQFSSYS 862
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIR----YFPGHTKKVVTMCLSPVEDTFLSGSLDKTL 429
N + + D Y +D +Y++ GH +K V+ +T +S S D +L
Sbjct: 863 NHLLAFGSA--DYKVY--CYDLRYVKTPWCTLAGH-EKAVSYVKFMDSETIVSASTDNSL 917
Query: 430 RLWDLRSPNCQGL 468
+LW+L N GL
Sbjct: 918 KLWNLNKTNSSGL 930
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 37.9 bits (84), Expect = 0.004
Identities = 24/106 (22%), Positives = 50/106 (47%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVD 237
+R+ + +F+ + ++ S+DFSPNG L S ED+Q I+D + + + V
Sbjct: 159 LRTARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDLRMRKLLYIIPAHVNLVS 218
Query: 238 LIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTM 375
+ + + + +++ D + S D ++ GH KV ++
Sbjct: 219 QVKYEPQERYFLATASH-DMNVNIWSGRDFSLVKSLVGHESKVASL 263
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +1
Query: 277 SSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
+S+ D R L + I F GH K+V+++ SP SG D R+WDLR
Sbjct: 146 ASSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDLR 202
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1
Query: 343 FPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGL 468
F GHT +V+ + S ++ LS S+DKT+RLW + S +C G+
Sbjct: 324 FRGHTGEVLDISWSK-DNYLLSASMDKTVRLWKVGSNDCLGV 364
Score = 35.9 bits (79), Expect = 0.017
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPV-EDTFLSGSLDKTLRLWDL 444
S +D T+R + N + F H V ++ +PV E+ F+SGS+D +R+W++
Sbjct: 344 SASMDKTVRLWKVGSNDCLGVF-AHNSYVTSVQFNPVNENYFMSGSIDGKVRIWNI 398
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 37.5 bits (83), Expect = 0.005
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = +1
Query: 91 ENTDKINSIDFSPNGETLISC---SEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAK 261
E+T + +I +SP+ +L++ + D I ++ G Q+ NS G + + +K
Sbjct: 338 EHTAAVKAITWSPHQSSLLASGGGTADRCIRFWNTTNGNQL---NSIDTGSQVCNLAWSK 394
Query: 262 NTAIHSSTK--VDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRL 435
N ST + I + GH+ +V+ + SP T ++G+ D+TLR
Sbjct: 395 NVNEIVSTHGYSQNQIMLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRF 454
Query: 436 WDL 444
W++
Sbjct: 455 WNV 457
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 37.5 bits (83), Expect = 0.005
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Frame = +1
Query: 55 VVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKK--Y 228
V S K + + + + I FS +G ++ D I +D E G + T ++ K Y
Sbjct: 312 VYNSGKCMRTYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYWDTETGQVISTFSTGKIPY 371
Query: 229 GVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLS 408
V L +N + + D I ++ + + + H V T+ F++
Sbjct: 372 VVKLNPDDDKQNILLAGMS--DKKIVQWDINTGEVTQEYDQHLGAVNTITFVDNNRRFVT 429
Query: 409 GSLDKTLRLWDLRSP 453
S DK+LR+W+ P
Sbjct: 430 SSDDKSLRVWEFGIP 444
Score = 35.5 bits (78), Expect = 0.022
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 229 GVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDN-KYIRYFPGHTKKVVTMCLSPVEDTFL 405
GV I F K + S +D ++ ++++ K +R + GH K V +C S FL
Sbjct: 284 GVSAIRF-FPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSNDGSKFL 342
Query: 406 SGSLDKTLRLWD 441
+ DK ++ WD
Sbjct: 343 TAGYDKNIKYWD 354
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 112 SIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKK 225
SI PNG L + S D+QI+IY + Q+ N KK
Sbjct: 460 SISVHPNGNWLAAQSLDNQILIYSTRERFQL---NKKK 494
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 37.1 bits (82), Expect = 0.007
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 328 KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQ 462
KY+ GH VT C + SGS+DKT+++WDL + C+
Sbjct: 302 KYLTSLEGHHSGEVT-CFVVGGEVLYSGSVDKTIKVWDLNTLQCR 345
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
GH + + L D S S D TL +WD S C
Sbjct: 185 GHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQC 221
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 37.1 bits (82), Expect = 0.007
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Frame = +1
Query: 49 DQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNS-KK 225
+ +V ++ K ++ +N++ F+ G+ LIS S+D ++V++D + G ++ +S
Sbjct: 43 ENLVLRLEIYKKLEKHKGCVNTVSFNAEGDVLISGSDDRRVVLWDWQLGNVKLSFHSGHA 102
Query: 226 YGVDLIHFTHAKNTAIHSSTKVDDTIRYLS-LHDNKYIRYFPG-HTKKVVTMCLSPVE-D 396
V F + + D +R S L +K F G H + +C+ P
Sbjct: 103 NNVFQAKFMPFSDDRTIVTCAADGMVRRASILEGDKVETSFLGLHQGRAHKLCIEPGNPH 162
Query: 397 TFLSGSLDKTLRLWDLRS 450
F + D ++ +DLR+
Sbjct: 163 IFYTCGEDGLVQRFDLRT 180
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 37.1 bits (82), Expect = 0.007
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 289 VDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
VD + + ++++ FPGH V +C SGS D+T+++W++
Sbjct: 242 VDRHVHIWDVRTREHVQAFPGHRNTVSCLCFRYGTSELYSGSFDRTVKVWNV 293
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 37.1 bits (82), Expect = 0.007
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Frame = +1
Query: 100 DKINSIDFSPNGETLISCSEDDQIVIYDCEK-GTQMITVNSKKYGVD---LIHFTHAKNT 267
D I+S+ FSP + L++ S D+Q+ ++ + G + + D L T
Sbjct: 26 DSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKASISHDQPVLCSAWKDDGT 85
Query: 268 AIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
+ S D + L H + M P + +GS DKTL+ WD R
Sbjct: 86 TVFSGG-CDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTR 144
Query: 448 SPN 456
N
Sbjct: 145 QQN 147
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 36.7 bits (81), Expect = 0.009
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 328 KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
KY+ GH+ +V C + SGS+DKT+++WDL + C
Sbjct: 249 KYLTSLEGHSGEVT--CFAVGGQMLYSGSVDKTIKMWDLNTLQC 290
Score = 34.3 bits (75), Expect = 0.050
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
GH K++ + L D S S+D TLR+WD S C
Sbjct: 129 GHNKELKGIALPEGSDKLFSVSIDGTLRVWDCNSGQC 165
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 36.7 bits (81), Expect = 0.009
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +1
Query: 277 SSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFL-SGSLDKTLRLWDLRSP 453
+ST D T++ + ++ GH + + P + SGSLD +RLW+ +
Sbjct: 122 ASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPHHSEIVASGSLDLEVRLWNTTTS 181
Query: 454 NCQGLMHLSGRPVA--AYDPEG 513
C HL RP+A A+ EG
Sbjct: 182 ECI-RSHLFYRPIASIAFHAEG 202
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 36.7 bits (81), Expect = 0.009
Identities = 24/114 (21%), Positives = 43/114 (37%)
Frame = +1
Query: 112 SIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKV 291
S+ ++ NG L++ S+D I +YD ++ + V + + S +
Sbjct: 315 SVKWNQNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSD 374
Query: 292 DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSP 453
++ H+N I H V + P+ SGS D T + W P
Sbjct: 375 GSICHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 428
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
GH V ++ P + +SG D+ ++LWD RS
Sbjct: 266 GHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRS 299
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 36.3 bits (80), Expect = 0.012
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 8/151 (5%)
Frame = +1
Query: 31 KMMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGT--QM 204
K+ +++ ++ + + F ++ + IN +DF P LIS ++D+ I +D K T +
Sbjct: 62 KVKQMISGDTQARPLIRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRA 121
Query: 205 ITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFP------GHTKKV 366
V + V I F H + + T D I +L N Y + P G + +
Sbjct: 122 FKVFQDTHNVRSISF-HPSGEFLLAGT--DHPIPHL-YDVNTYQCFLPSNFPDSGVSGAI 177
Query: 367 VTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
+ S +++ S D +RL+D S C
Sbjct: 178 NQVRYSSTGSIYITASKDGAIRLFDGVSAKC 208
Score = 29.1 bits (62), Expect = 1.9
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Frame = +1
Query: 76 AKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
+K E+ + FSP+G + D I +++ K QMI+ +++ + + H
Sbjct: 24 SKTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQMISGDTQARPLIRTFYDH 83
Query: 256 A----------KNTAIHSSTKVDDTIRYLSLHDNKYIRYFP--GHTKKVVTMCLSPVEDT 399
A ++T + SS K D+ I++ R F T V ++ P +
Sbjct: 84 AEPINDLDFHPRSTILISSAK-DNCIKFFDFSKTTAKRAFKVFQDTHNVRSISFHPSGEF 142
Query: 400 FLSGSLDKTLRLWDLRSPNC 459
L+G+ L+D+ + C
Sbjct: 143 LLAGTDHPIPHLYDVNTYQC 162
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 36.3 bits (80), Expect = 0.012
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 8/151 (5%)
Frame = +1
Query: 31 KMMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGT--QM 204
K+ +++ ++ + + F ++ + IN +DF P LIS ++D+ I +D K T +
Sbjct: 154 KVKQMISGDTQARPLIRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRA 213
Query: 205 ITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFP------GHTKKV 366
V + V I F H + + T D I +L N Y + P G + +
Sbjct: 214 FKVFQDTHNVRSISF-HPSGEFLLAGT--DHPIPHL-YDVNTYQCFLPSNFPDSGVSGAI 269
Query: 367 VTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
+ S +++ S D +RL+D S C
Sbjct: 270 NQVRYSSTGSIYITASKDGAIRLFDGVSAKC 300
Score = 29.1 bits (62), Expect = 1.9
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Frame = +1
Query: 76 AKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
+K E+ + FSP+G + D I +++ K QMI+ +++ + + H
Sbjct: 116 SKTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQMISGDTQARPLIRTFYDH 175
Query: 256 A----------KNTAIHSSTKVDDTIRYLSLHDNKYIRYFP--GHTKKVVTMCLSPVEDT 399
A ++T + SS K D+ I++ R F T V ++ P +
Sbjct: 176 AEPINDLDFHPRSTILISSAK-DNCIKFFDFSKTTAKRAFKVFQDTHNVRSISFHPSGEF 234
Query: 400 FLSGSLDKTLRLWDLRSPNC 459
L+G+ L+D+ + C
Sbjct: 235 LLAGTDHPIPHLYDVNTYQC 254
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 35.9 bits (79), Expect = 0.017
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 223 KYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSL-HDNKYIRYFPGHTKKVVTMCLSPVEDT 399
K V ++ F H + + D ++ SL + ++ GH+K V S
Sbjct: 172 KSSVTVLKFGHMSSDILAYGAS-DGSLTVCSLLEEPSVLKQLTGHSKDVTDFDFSSNNQY 230
Query: 400 FLSGSLDKTLRLWDLRSPNC 459
S SLDKT+R+W+L C
Sbjct: 231 IASSSLDKTIRVWELSRGVC 250
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 277 SSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFL-SGSLDKTLRLWDLRSP 453
+ST D T++ + K ++ GH + + P + SGSLD +RLW+ ++
Sbjct: 119 ASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTG 178
Query: 454 NCQGLMHLSGRPVAA 498
C H RP+A+
Sbjct: 179 ECI-RTHDFYRPIAS 192
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 277 SSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFL-SGSLDKTLRLWDLRSP 453
+ST D T++ + K ++ GH + + P + SGSLD +RLW+ ++
Sbjct: 119 ASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTG 178
Query: 454 NCQGLMHLSGRPVAA 498
C H RP+A+
Sbjct: 179 ECI-RTHDFYRPIAS 192
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 35.5 bits (78), Expect = 0.022
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
GH K + MCL+ D LSGS DK+LR+W
Sbjct: 326 GHRKAI--MCLAVASDLVLSGSADKSLRVW 353
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 35.5 bits (78), Expect = 0.022
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +1
Query: 292 DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
D+TI+ SL D + GH V T+ + V SGS D T+RLW L
Sbjct: 606 DNTIKAWSLQDGSLLCTMSGHKSVVSTLVV--VNGVLYSGSWDGTVRLWSL 654
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 35.1 bits (77), Expect = 0.029
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL-RSPNCQ 462
GHT +V+ + +SP T ++G+ D+TLR W++ SP Q
Sbjct: 463 GHTYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQ 501
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 35.1 bits (77), Expect = 0.029
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
Frame = +1
Query: 55 VVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGV 234
V RS V ++ +E+ ++ SID S TL++ DD G + T+ +K V
Sbjct: 613 VARSQLVTEM-KEHKKRVWSIDISSADPTLLASGSDD-------GTGVSIGTIKTKA-NV 663
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKY-IRYFPGHTKKVVTMCLSPVEDTFLSG 411
+ F ++ + D + Y L + K + GH+ K V+ T +S
Sbjct: 664 CCVQFPSDSGRSL-AFGSADHKVYYYDLRNPKIPLCTMIGHS-KTVSYVKFVDSSTLVSS 721
Query: 412 SLDKTLRLWDL 444
S D TL+LWDL
Sbjct: 722 STDNTLKLWDL 732
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 35.1 bits (77), Expect = 0.029
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 8/152 (5%)
Frame = +1
Query: 88 RENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNT 267
+ N I S+D + + + + D V++D G + T+ V I F +
Sbjct: 219 KTNKPGIFSMDILHSKDVIATGGIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDL 278
Query: 268 AIHSSTKVDDTIRYLSL-HDNKYI--RYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
+ +S+ D T+R D Y H+ +V + + F+S SLD T +
Sbjct: 279 VLTASS--DKTVRIWGCSEDGNYTSRHTLKDHSAEVRAVTVHATNKYFVSASLDSTWCFY 336
Query: 439 DLRSPNCQG-LMHLSGRPV----AAYDPEGLI 519
DL S C + S V AA+ P+GLI
Sbjct: 337 DLSSGLCLAQVTDASENDVNYTAAAFHPDGLI 368
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 34.7 bits (76), Expect = 0.038
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = +1
Query: 91 ENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITV---NSKKYGVDLIHFTHAK 261
E + SI+++ +G L ++ ++ ++DC Q+ T+ + + G L H
Sbjct: 132 EEEGPVTSINWTQDGLDLAIGLDNSEVQLWDCVSNRQVRTLRGGHESRVG-SLAWNNHIL 190
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
T V++ +R S Y+ GHT++V + S SG D + +WD
Sbjct: 191 TTGGMDGKIVNNDVRIRSSIVETYL----GHTEEVCGLKWSESGKKLASGGNDNVVHIWD 246
Query: 442 LRS 450
RS
Sbjct: 247 HRS 249
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
GHT +V+ M SP T S + D+TLRLW++
Sbjct: 353 GHTSRVLFMAQSPDGCTVASAAGDETLRLWNV 384
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 34.7 bits (76), Expect = 0.038
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 67 FKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQM 204
FK RE+++ +N I +SP+G I+ S D + +IYD + G ++
Sbjct: 41 FKFHSSHREHSNFVNCIRYSPDGTKFITVSSDKKGMIYDGKTGDKV 86
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 94 NTDKINSIDFSPNGETLISCSEDDQIVIYDCEK-GTQMITV-NSKKYGVDLIHF 249
+T +INS+ +SPN + + + S D +++Y+ +K + IT N+ GV+ + F
Sbjct: 398 HTARINSLAWSPNNKMVATGSIDTCVIVYEVDKPASSRITARNAHLGGVNAVAF 451
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 34.3 bits (75), Expect = 0.050
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Frame = +1
Query: 79 KVFRENTDKINSIDFSPNGETLI-SCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
+ F ++ + S+DF P + LI SC D++I + G+ K G I F
Sbjct: 730 RTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGS---CTRVYKGGSTQIRFQP 786
Query: 256 AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRL 435
+ +S+ + + L + GH + ++C P D FL+ + +++
Sbjct: 787 RVGKYLAASSA--NLVNVLDVETQAIRHSLQGHANPINSVCWDPSGD-FLASVSEDMVKV 843
Query: 436 WDL 444
W L
Sbjct: 844 WTL 846
Score = 33.1 bits (72), Expect = 0.12
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Frame = +1
Query: 94 NTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQ-----MITVNSKKYGVDLIHFTHA 258
+ + INS+ + P+G+ L S SE D + ++ G++ ++ N K+ + H +
Sbjct: 817 HANPINSVCWDPSGDFLASVSE-DMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYP 875
Query: 259 KNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
I ++ ++ +NK + P H + ++ +S S S DK ++LW
Sbjct: 876 SLLVIGCY----QSLELWNMSENKTMT-LPAHEGLITSLAVSTATGLVASASHDKLVKLW 930
Score = 29.1 bits (62), Expect = 1.9
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Frame = +1
Query: 130 NGETLISCSEDDQ----IVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVDD 297
N E+ +S + DQ D KG VNS + + H + ++ D
Sbjct: 613 NVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFSSDGKMLASAGHD 672
Query: 298 TIRYLSLHDN-KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
L D K HT + + SP + + S DKT+R+WD
Sbjct: 673 KKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWD 721
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 34.3 bits (75), Expect = 0.050
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 403 LSGSLDKTLRLWDLRSPNCQGLMHLSGRPV 492
+SGS+D T+R+WDL S N +MH PV
Sbjct: 553 ISGSMDCTIRIWDLESGNVIMIMHHHVAPV 582
>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
family protein similar to TUPA (GI:11066216) [Emericella
nidulans]; similar to damage-specific DNA binding
protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies,1
weak)|19797453|gb|AU229277.1|AU229277
Length = 783
Score = 33.9 bits (74), Expect = 0.067
Identities = 20/113 (17%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Frame = +1
Query: 100 DKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQM-ITVNSKKYGVDLIHFTHAKNTAIH 276
D++ S+ + + ++ + +YD +GT++ + N + ++++ F++ + +
Sbjct: 541 DQLTSVHANSTDQLFLASGYSKDVALYDIGRGTRLQVFANMHQEHINVVKFSN-HSPFLF 599
Query: 277 SSTKVDDTIRYLSL-HDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLR 432
+++ D ++ L + Y TK V +C SP + L+ ++D +R
Sbjct: 600 ATSSFDKDVKLWDLRQEPSRPCYTASSTKGNVMVCFSPDDRYLLASAVDNEVR 652
Score = 27.9 bits (59), Expect = 4.4
Identities = 26/136 (19%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Frame = +1
Query: 142 LISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTK-----VDDTIR 306
+I+ S + + +YD +K + +T +S + + T++H+++ +
Sbjct: 503 VIAGSANGSLKLYDIQKASSTVTTSSHSTSGSVTFDEFDQLTSVHANSTDQLFLASGYSK 562
Query: 307 YLSLHD---NKYIRYFPGHTKKVVTMCLSPVEDTFL--SGSLDKTLRLWDLR---SPNCQ 462
++L+D ++ F ++ + + FL + S DK ++LWDLR S C
Sbjct: 563 DVALYDIGRGTRLQVFANMHQEHINVVKFSNHSPFLFATSSFDKDVKLWDLRQEPSRPCY 622
Query: 463 GLMHLSGRPVAAYDPE 510
G + + P+
Sbjct: 623 TASSTKGNVMVCFSPD 638
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 33.9 bits (74), Expect = 0.067
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
S +D IR + + + FPGH V + S + +S D T+RLW++ P+
Sbjct: 74 SASMDGDIRLWDISSRRTVCQFPGHQGAVRGLTASTDGNVLVSCGTDCTVRLWNVPRPSL 133
Query: 460 Q 462
+
Sbjct: 134 E 134
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 33.9 bits (74), Expect = 0.067
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
GHT V + L LSGS D +RLWDL C
Sbjct: 253 GHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRC 289
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
GH + V + ++ +SG +K LR+WD R+
Sbjct: 211 GHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRT 244
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 33.9 bits (74), Expect = 0.067
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
GHT V + L LSGS D +RLWDL C
Sbjct: 253 GHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRC 289
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
GH + V + ++ +SG +K LR+WD R+
Sbjct: 211 GHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRT 244
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 33.9 bits (74), Expect = 0.067
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Frame = +1
Query: 88 RENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKG----TQMITVNSKKYGVDLIHFTH 255
+ + D +N+I S NG T+ + S D +I ++ G T + T+ K V+ +
Sbjct: 232 KAHDDAVNAIAVSTNG-TVYTGSADRRIRVWAKPTGEKRHTLVATLEKHKSAVNALALND 290
Query: 256 AKNTAIHSSTKVDDTIRYLSLHD-NKYIRY---FPGHTKKVVTMCLSPVEDTFLSGSLDK 423
+ ++ S D +I D + Y+ GH K +++ L V D LSGS D+
Sbjct: 291 --DGSVLFSGSCDRSILVWEREDTSNYMAVRGALRGHDKAILS--LFNVSDLLLSGSADR 346
Query: 424 TLRLW 438
T+R+W
Sbjct: 347 TVRIW 351
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 33.9 bits (74), Expect = 0.067
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = +1
Query: 124 SPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKVDDTI 303
+P+G LIS S+D ++ + E G + T K V KN +S D T
Sbjct: 23 TPDGFFLISASKDSNPMLRNGETGDWIGTFEGHKGAVWSCSLD--KNAIRAASASADFTA 80
Query: 304 RYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDT--FLSGSLDKTLRLWDLRSPN 456
+ + + F K +V C EDT L+G ++K LR++DL P+
Sbjct: 81 KIWNALTGDELHSF--EHKHIVRACAFS-EDTHRLLTGGMEKILRIFDLNRPD 130
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSG 483
GH V + +P +++ SGS D T+R+W + S N +LSG
Sbjct: 263 GHHGPVHCVRYAPGGESYTSGSEDGTVRIWVVGSVNHPEESNLSG 307
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 33.5 bits (73), Expect = 0.088
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL-RSPNCQ 462
GH+ +V+ + +SP T ++G+ D+TLR W++ SP Q
Sbjct: 420 GHSYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQ 458
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 33.5 bits (73), Expect = 0.088
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSST 285
INSI FS +G L + D + I+D TQ + K Y L+ + + + +
Sbjct: 306 INSIAFSNDGAHLATVGRDGYLRIFDFL--TQKLVCGGKSYYGALLCCSWSMDGKYILTG 363
Query: 286 KVDDTIRYLSLHDNKYIRYFPGHTKKV 366
DD ++ S+ D K + + GH V
Sbjct: 364 GEDDLVQVWSMEDRKVVAWGEGHNSWV 390
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 33.5 bits (73), Expect = 0.088
Identities = 24/87 (27%), Positives = 38/87 (43%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSST 285
INSI FS +G L + D + I+D TQ + K Y L+ + + +
Sbjct: 306 INSIAFSNDGAYLATVGRDGYLRIFDF--STQKLVCGVKSYYGALLCCAWSMDGKYLLTG 363
Query: 286 KVDDTIRYLSLHDNKYIRYFPGHTKKV 366
DD ++ S+ D K + + GH V
Sbjct: 364 GEDDLVQVWSMEDRKVVAWGEGHNSWV 390
>At1g69400.2 68414.m07968 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 272
Score = 33.5 bits (73), Expect = 0.088
Identities = 25/116 (21%), Positives = 49/116 (42%)
Frame = +1
Query: 100 DKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHS 279
D ++ + FSP L+ S D + +YD E + + +NS+ +D +N +
Sbjct: 14 DAVSRLRFSPQSNNLLVASWDSYLRLYDVESSSLSLELNSQAALLDCCF----ENESTSF 69
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
++ D IR L+ + H ++ S + +S D+ ++ WD R
Sbjct: 70 TSGSDGFIRRYDLNAGT-VDTIGRHDDISTSIVYSYEKGEVISTGFDEKIKFWDTR 124
>At1g69400.1 68414.m07969 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 314
Score = 33.5 bits (73), Expect = 0.088
Identities = 25/116 (21%), Positives = 49/116 (42%)
Frame = +1
Query: 100 DKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHS 279
D ++ + FSP L+ S D + +YD E + + +NS+ +D +N +
Sbjct: 14 DAVSRLRFSPQSNNLLVASWDSYLRLYDVESSSLSLELNSQAALLDCCF----ENESTSF 69
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
++ D IR L+ + H ++ S + +S D+ ++ WD R
Sbjct: 70 TSGSDGFIRRYDLNAGT-VDTIGRHDDISTSIVYSYEKGEVISTGFDEKIKFWDTR 124
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 33.5 bits (73), Expect = 0.088
Identities = 30/117 (25%), Positives = 50/117 (42%)
Frame = +1
Query: 97 TDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIH 276
+D I+++ FS N + L+ S D + +YD ++ K G L H ++
Sbjct: 16 SDGISNLRFSNNSDHLLVSSWDKSVRLYDANG--DLMRGEFKHGGAVLDCCFHDDSSGF- 72
Query: 277 SSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
S D +R + + K H K V + S ++GS DKT++ WD R
Sbjct: 73 -SVCADTKVRRIDFNAGKE-DVLGTHEKPVRCVEYSYAAGQVITGSWDKTIKCWDPR 127
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/92 (20%), Positives = 41/92 (44%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHF 249
K + F + + + +S G +L+SC D ++D E+G + + + V ++ F
Sbjct: 196 KKVRAFLHHNAPVKDVKWSKQGLSLLSCGYDCTSRLFDVERGVETQSFKEDEV-VGVVKF 254
Query: 250 THAKNTAIHSSTKVDDTIRYLSLHDNKYIRYF 345
H N + S ++R + NK++ +
Sbjct: 255 -HPDNCNVFLSGGSKGSLRLWDIRANKFVHEY 285
Score = 30.7 bits (66), Expect = 0.62
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 118 DFSPNGETLISCSEDDQIVIYDCEKGTQMI 207
+FSP+GETL S S D + +YD K T +I
Sbjct: 393 NFSPDGETLASGSSDGSVYMYD-YKSTALI 421
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
GHT +V+ M SP T S + D+TLRLW++
Sbjct: 370 GHTSRVLFMAQSPDGCTVASAAGDETLRLWNV 401
Score = 30.7 bits (66), Expect = 0.62
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITV---NSKKYGVDL 240
K+ + EN + SI+++ +G L ++ ++ ++DC + T+ + + G L
Sbjct: 144 KLVTIDDEN-GPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVG-SL 201
Query: 241 IHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLD 420
H T V++ +R S Y+ GHT++V + S SG D
Sbjct: 202 AWNNHILTTGGMDGKIVNNDVRIRSSIIGTYV----GHTEEVCGLKWSESGKKLASGGND 257
Query: 421 KTLRLWD 441
+ +WD
Sbjct: 258 NVVHIWD 264
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 33.1 bits (72), Expect = 0.12
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSE---DDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
F E+T + ++ + P TL++ D +I ++ G + +V + L+
Sbjct: 294 FEEHTAAVRALAWCPFQATLLATGGGVGDGKIKFWNTHTGACLNSVETGSQVCSLLWSQR 353
Query: 256 AKNT-AIHSSTKVDDTI-RYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTL 429
+ + H T+ T+ +Y S+ + GHT +V+ M SP T S + D+ L
Sbjct: 354 ERELLSSHGFTQNQLTLWKYPSMSKMAELN---GHTSRVLFMAQSPNGCTVASAAGDENL 410
Query: 430 RLWDL 444
RLW++
Sbjct: 411 RLWNV 415
Score = 27.1 bits (57), Expect = 7.7
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Frame = +1
Query: 91 ENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITV---NSKKYGVDLIHFTHAK 261
E+ + SI+++ +G L ++ ++ ++D Q+ T+ + + G L H
Sbjct: 163 EDKGPVTSINWTQDGLDLAVGLDNSEVQLWDFVSNRQVRTLIGGHESRVG-SLAWNNHIL 221
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
T V++ +R S Y+ GHT++V + S SG + +WD
Sbjct: 222 TTGGMDGKIVNNDVRIRSSIVGTYL----GHTEEVCGLKWSESGKKLASGGNYNVVHIWD 277
Query: 442 LRS 450
RS
Sbjct: 278 HRS 280
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 33.1 bits (72), Expect = 0.12
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Frame = +1
Query: 73 VAKVFRENTDKINSIDFSPNGET-LISCSEDDQIVIYDCEKGTQMITVNSK---KYGVDL 240
V+++ + ++ + PN + LI+ S D +++D G + + + D+
Sbjct: 148 VSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADV 207
Query: 241 IHFT-HAKNTAIHSSTKVDDTIRYLSLHD-NKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
+ + N S D T R ++ +R F GH V T+ P F +GS
Sbjct: 208 LSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGS 267
Query: 415 LDKTLRLWDLRS 450
D T RL+D+R+
Sbjct: 268 DDGTCRLYDIRT 279
Score = 31.1 bits (67), Expect = 0.47
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Frame = +1
Query: 79 KVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFT-H 255
+ + +T K+ S+D++P ++S S+D ++++++ + + V F+ +
Sbjct: 59 RTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPN 118
Query: 256 AKNTAIHSSTKVDDTIRYLSLHDN----KYIRYFPGHTKKVVTMCLSPVEDTFL-SGSLD 420
++ A V S D R GH V P ED L + S D
Sbjct: 119 GQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGD 178
Query: 421 KTLRLWDL 444
+T LWD+
Sbjct: 179 QTCILWDV 186
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 25 CIKMMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQM 204
C +L D S + + F + +N++ F P+G + S+D +YD G Q+
Sbjct: 225 CDSTARLWDTRAAS-RAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQL 283
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 33.1 bits (72), Expect = 0.12
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Frame = +1
Query: 73 VAKVFRENTDKINSIDFSPNGET-LISCSEDDQIVIYDCEKGTQMITVNSK---KYGVDL 240
V+++ + ++ + PN + LI+ S D +++D G + + + D+
Sbjct: 86 VSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADV 145
Query: 241 IHFT-HAKNTAIHSSTKVDDTIRYLSLHD-NKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
+ + N S D T R ++ +R F GH V T+ P F +GS
Sbjct: 146 LSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGS 205
Query: 415 LDKTLRLWDLRS 450
D T RL+D+R+
Sbjct: 206 DDGTCRLYDIRT 217
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 25 CIKMMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQM 204
C +L D S + + F + +N++ F P+G + S+D +YD G Q+
Sbjct: 163 CDSTARLWDTRAAS-RAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQL 221
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 33.1 bits (72), Expect = 0.12
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Frame = +1
Query: 73 VAKVFRENTDKINSIDFSPNGET-LISCSEDDQIVIYDCEKGTQMITVNSK---KYGVDL 240
V+++ + ++ + PN + LI+ S D +++D G + + + D+
Sbjct: 148 VSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADV 207
Query: 241 IHFT-HAKNTAIHSSTKVDDTIRYLSLHD-NKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
+ + N S D T R ++ +R F GH V T+ P F +GS
Sbjct: 208 LSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGS 267
Query: 415 LDKTLRLWDLRS 450
D T RL+D+R+
Sbjct: 268 DDGTCRLYDIRT 279
Score = 31.1 bits (67), Expect = 0.47
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Frame = +1
Query: 79 KVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFT-H 255
+ + +T K+ S+D++P ++S S+D ++++++ + + V F+ +
Sbjct: 59 RTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPN 118
Query: 256 AKNTAIHSSTKVDDTIRYLSLHDN----KYIRYFPGHTKKVVTMCLSPVEDTFL-SGSLD 420
++ A V S D R GH V P ED L + S D
Sbjct: 119 GQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGD 178
Query: 421 KTLRLWDL 444
+T LWD+
Sbjct: 179 QTCILWDV 186
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 25 CIKMMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQM 204
C +L D S + + F + +N++ F P+G + S+D +YD G Q+
Sbjct: 225 CDSTARLWDTRAAS-RAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQL 283
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 33.1 bits (72), Expect = 0.12
Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 6/130 (4%)
Frame = +1
Query: 73 VAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVN----SKKYGVDL 240
+ +V + + + +DF PNGE L S ++ ++ + G T+ + +
Sbjct: 138 IVRVLKGHKGPVTGLDFHPNGELLASIDTTGTVLCWELQNGVVSFTLKGVAPDTGFNTSI 197
Query: 241 IHFTH--AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGS 414
++ + +D + Y K H + + + +P +
Sbjct: 198 VNIPRWSPDGRTLAVPGLRNDVVMYDRFTGEKLFALRGDHLEAICYLTWAPNGKYIATSG 257
Query: 415 LDKTLRLWDL 444
LDK + LWD+
Sbjct: 258 LDKQVLLWDV 267
Score = 32.7 bits (71), Expect = 0.15
Identities = 23/123 (18%), Positives = 50/123 (40%)
Frame = +1
Query: 82 VFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAK 261
+ R + D + S+ S + L S S D + +Y G + + ++ F +
Sbjct: 57 ILRHHQDGVTSLALSNDSTLLASGSIDHCVKLYKFPSGEFQTNITRFTLPIRVLAFNGSG 116
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
+ + ++ D+ I+ ++ D +R GH V + P + S T+ W+
Sbjct: 117 S--LLAAAGDDEGIKLINTFDGSIVRVLKGHKGPVTGLDFHPNGELLASIDTTGTVLCWE 174
Query: 442 LRS 450
L++
Sbjct: 175 LQN 177
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 67 FKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYD 183
FK RE+++ +N + F+P+G I+ S D + +IYD
Sbjct: 177 FKFKLSSREHSNFVNCVRFAPDGSKFITVSSDKKGIIYD 215
Score = 32.3 bits (70), Expect = 0.20
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCE---KGTQMITVN--SKKYGV-DLIHFTHAKNT 267
I ++ +SP+G+ +++ S D I+D G+ T+N GV D++ +N
Sbjct: 235 IYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGSLNTTLNCPGSSGGVDDMLVGCLWQND 294
Query: 268 AIHSSTKVDDTIRYLSLHD-NKYIRYFPGHTKKVVTMC-LSPVEDTFLSGSLDKTLRLWD 441
I + + TI S D +K F GH K V ++ L D LSGS D + W
Sbjct: 295 HI-VTVSLGGTISIFSASDLDKSPFQFSGHMKNVSSLAVLKGNADYILSGSYDGLICKWM 353
Query: 442 LRSPNCQGLMHLSGRPVAAY 501
L C L + +
Sbjct: 354 LGRGFCGKLQRTQNSQIKCF 373
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 49 DQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEK-GTQMITVNSKK 225
D+V R K+ + + +IN + +SPN + + S D +++Y+ +K + +T+
Sbjct: 519 DRVSREMKLKNMLYHSA-RINCLAWSPNSTMVATGSLDTCVIVYEVDKPASSRMTIKGAH 577
Query: 226 YG 231
G
Sbjct: 578 LG 579
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 292 DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
D +R H K I GH V + +P +++ SGS D T+R+W
Sbjct: 249 DMWVRLFDFHTGKEIGCNKGHHGPVHCVRFAPTGESYASGSEDGTIRIW 297
Score = 27.5 bits (58), Expect = 5.8
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Frame = +1
Query: 124 SPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIH-SSTKVDDT 300
+P+G LIS S+D Q ++ + E G + T K + + N A+ +S D +
Sbjct: 28 TPDGFFLISASKDSQPMLRNGETGDWIGTFEGHK---GAVWSSCLDNNALRAASASADFS 84
Query: 301 IRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFL-SGSLDKTLRLWDL 444
+ + F K +V C + +L +G +K LR++DL
Sbjct: 85 AKLWDALTGDVLHSF--EHKHIVRACAFSQDTKYLITGGFEKILRVFDL 131
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 32.7 bits (71), Expect = 0.15
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Frame = +1
Query: 142 LISCSEDDQIVIYDCEKGTQM--ITVNSKKYGVDLI--HFTHAKNTAIHSSTKVDDTIRY 309
+ SCSE IV++ + G + + N K + + + A + KV + +
Sbjct: 212 IASCSEGTDIVLWHGKTGRNLGHVDTNQLKNHMAAVSPNGRFLAAAAFTADVKVWEIVYQ 271
Query: 310 L--SLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
S+ + + GH V +C SP + ++ S D ++R+W++
Sbjct: 272 KDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVWNI 318
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 292 DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
D++I+ +S K + GH V + LSP + ++GS D T+ LW
Sbjct: 2647 DNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSRDSTVLLW 2695
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 322 DNKYIRYFPGHTKKVVTMCLSPVED-TFLSGSLDKTLRLWDLRS 450
DN+ + HT V + +P + + +GS D+TLR+WD RS
Sbjct: 199 DNRVFQNSKVHTMGVCCISSNPSDPYSIFTGSYDETLRVWDTRS 242
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 32.3 bits (70), Expect = 0.20
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 ENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITV---NSKKYGVDLIHFTHAK 261
E+ + SI+++ +G L ++ ++ ++DC Q+ T+ + + G L H
Sbjct: 166 EDKGPVTSINWTQDGLDLAVGLDNSEVQLWDCVSNRQVRTLRGGHESRVG-SLAWDNHIL 224
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
T V++ +R S Y+ GHT++V + S + SG D + +WD
Sbjct: 225 TTGGMDGKIVNNDVRIRSSIVETYL----GHTEEVCGLKWSESGNKQASGGNDNVVHIWD 280
Score = 31.9 bits (69), Expect = 0.27
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSE---DDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
F E+T + ++ + P +L++ D +I ++ G + +V + L+ ++
Sbjct: 296 FEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSVETGSQVCSLL-WSQ 354
Query: 256 AKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRL 435
++ + S + + + GHT +V+ M SP T S + D+ LRL
Sbjct: 355 SERELLSSHGFTQNQLTLWKYPSMSKMAELNGHTSRVLFMAQSPNGCTVASAAGDENLRL 414
Query: 436 WDL 444
W++
Sbjct: 415 WNV 417
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 31.9 bits (69), Expect = 0.27
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Frame = +1
Query: 61 RSFKVAKVFRE-NTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQ---MITVNSKKY 228
RS+ V E +T + S +SP+G+ L + S D I+ G++ + T+ +
Sbjct: 61 RSWTCKTVLEETHTRTVRSCAWSPSGQLLATASFDGTTGIWK-NYGSEFECISTLEGHEN 119
Query: 229 GVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKY--IRYFPGHTKKVVTMCLSPVEDTF 402
V + + +A + + + ++ + L N+Y GHT+ V + P D
Sbjct: 120 EVKSVSW-NASGSCLATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVL 178
Query: 403 LSGSLDKTLRLW 438
S S D T+++W
Sbjct: 179 FSCSYDNTIKVW 190
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 31.9 bits (69), Expect = 0.27
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Frame = +1
Query: 34 MMKLVDQVVRSFKVAKVFRENTDKINSIDF--SPNGET-LISCSEDDQIVIYDCEKGTQM 204
+ K V+Q +F ++ E+ N++D P+G LI+ + D +I ++D + T++
Sbjct: 184 LCKCVNQPGVAF-CTRLSTEDNAITNTVDIYRDPSGSLRLITANNDCKIRVFDAQSFTRV 242
Query: 205 ITVNSKKYGVDLIHFTHAKNTAIHSSTKV-----DDTIRYLS-LHDNKYIRYFPGHTKKV 366
++ +D NT++ K+ D T +S H K I GH
Sbjct: 243 -----SEFALDW----SVNNTSVSPDGKLLAVVGDSTECLISDSHSGKVISSLRGHKDYS 293
Query: 367 VTMCLSPVEDTFLSGSLDKTLRLWDLRSPN 456
P +G+ D RLWD+R+P+
Sbjct: 294 FASAWHPNGLILATGNQDTACRLWDIRNPS 323
Score = 28.3 bits (60), Expect = 3.3
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Frame = +1
Query: 82 VFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKG---TQMITVNSKKYGVDLIHFT 252
V + N I + F+P G L D + I+D + G +Q I + + G+ T
Sbjct: 328 VLKGNMGAIRGLKFTPEGRFLAMAEPADFVHIFDTQSGFLQSQEIDLFGEIAGISFSPDT 387
Query: 253 HAKNTAIHSSTKVDDTIRYLSLHDNKYIRYF 345
A + T + Y DN Y+ F
Sbjct: 388 EALYVGVADRT-YGSLLEYKRRKDNHYMDSF 417
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
GHT +V+ M SP T S + D+TLR W++
Sbjct: 400 GHTSRVLYMAQSPDGCTVASAAGDETLRFWNV 431
Score = 30.7 bits (66), Expect = 0.62
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 ENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITV---NSKKYGVDLIHFTHAK 261
E + SI+++P+G + + ++ ++D Q+ T+ + + G L H
Sbjct: 180 EEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVG-SLAWNNHIL 238
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
T +++ +R S + + GHT++V + S SG D + +WD
Sbjct: 239 TTGGMDGLIINNDVRIRS----PIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWD 294
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
GHT +V+ M SP T S + D+TLR W++
Sbjct: 390 GHTSRVLYMAQSPDGCTVASAAGDETLRFWNV 421
Score = 30.7 bits (66), Expect = 0.62
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Frame = +1
Query: 91 ENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITV---NSKKYGVDLIHFTHAK 261
E + SI+++P+G + + ++ ++D Q+ T+ + + G L H
Sbjct: 170 EEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVG-SLAWNNHIL 228
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
T +++ +R S + + GHT++V + S SG D + +WD
Sbjct: 229 TTGGMDGLIINNDVRIRS----PIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWD 284
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSG-RPVA-AYDPEG 513
GH K V+ + SP + L+ ++ +R WD+ S +C + G P++ + P+G
Sbjct: 317 GHHKPVIAILWSPDDRQVLTCGAEEVIRRWDVDSGDCVHMYEKGGISPISCGWYPDG 373
Score = 30.7 bits (66), Expect = 0.62
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYD 183
+ A++ +TD++ + FS NG+ L S S+D +I++
Sbjct: 265 QTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWE 302
>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 31.1 bits (67), Expect = 0.47
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 139 TLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
T +C +D Y C++ VN +KY ++ HF+H
Sbjct: 150 TCAACGKDGDGYSYKCQECNLTFHVNCEKYPAEVTHFSH 188
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 352 HTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
H V LS + LSGS DKT+R+W +
Sbjct: 894 HKSTVTCFSLSETGECVLSGSADKTIRVWQI 924
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPN 456
GHTK V ++ + LSGS D T+R++D + N
Sbjct: 175 GHTKIVSSLAVDSAGARVLSGSYDYTVRMYDFQGMN 210
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 31.1 bits (67), Expect = 0.47
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 283 TKVDDTIRYL-SLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
T D+ Y + K F GH+ + T+ L+GS D T R+WD ++ C
Sbjct: 176 TAAGDSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKC 235
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +1
Query: 58 VRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSK 222
V S K+ F+ ++D ++++ + +++ SED I+DC+ G + + S+
Sbjct: 188 VESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVIGSQ 242
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 31.1 bits (67), Expect = 0.47
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 211 VNSKKYGVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPV 390
V +K G ++ F +AK+ A +++ D +R + GH K+ + SP
Sbjct: 132 VGAKTSGCEVFLFDYAKHAAKSQTSECDPDLRLV------------GHDKEGYGLSWSPF 179
Query: 391 EDTFL-SGSLDKTLRLWDL 444
++ +L SGS D+ + LWD+
Sbjct: 180 KEGYLLSGSQDQKICLWDV 198
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 31.1 bits (67), Expect = 0.47
Identities = 31/124 (25%), Positives = 52/124 (41%)
Frame = +1
Query: 103 KINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSS 282
KI ++ FSP+G+ L + ED + I+ IT++ L F + +
Sbjct: 200 KIWTLKFSPDGKYLATGGEDGVVKIW-------RITLSDSL----LASFLRQQEPINQQA 248
Query: 283 TKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQ 462
V + + + + + GHT V+ + S + LS S DKT+RLW C
Sbjct: 249 ALVLFPQKAFHIEETPFQELY-GHTGDVLDLAWSD-SNLLLSASKDKTVRLWRTGCDQCL 306
Query: 463 GLMH 474
+ H
Sbjct: 307 HVFH 310
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 235 DLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPV-EDTFLSG 411
D++ + + + S++K D T+R ++ + F H V + +PV ++ F SG
Sbjct: 274 DVLDLAWSDSNLLLSASK-DKTVRLWRTGCDQCLHVFH-HNNYVTCVEFNPVNKNNFASG 331
Query: 412 SLDKTLRLWDL 444
S+D R+W L
Sbjct: 332 SIDGKARIWGL 342
>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to uncharacterized protein KIAA0007 (GI:1663708)
{Homo sapiens} 1.2e-11
Length = 615
Score = 30.7 bits (66), Expect = 0.62
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 229 GVDLIHFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLS 408
GV+ + + AK + I+S D + + H IR F TK V ++C+SP ++
Sbjct: 118 GVNAVS-SSAKASCIYSGG-ADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVT 175
Query: 409 GSLD-KTLRLWDLR 447
S KT DL+
Sbjct: 176 ASTQLKTFNCSDLK 189
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 30.7 bits (66), Expect = 0.62
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 220 KKYGVDLIHFTHAKNTAIHS-STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVED 396
K Y V+ I A N + + I + K ++ + GH + V + S +
Sbjct: 74 KSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVTCLVFSGDDS 133
Query: 397 TFLSGSLDKTLRLWDL 444
+SGS D ++R+W L
Sbjct: 134 LLVSGSQDGSIRVWSL 149
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 30.7 bits (66), Expect = 0.62
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 331 YIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
Y+ Y GHT V ++ + SGS D ++R+W++ + C
Sbjct: 416 YLEY-KGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRC 457
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 30.7 bits (66), Expect = 0.62
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
S D TI+ + D+K + P H V ++ +S E SGS D T++ W
Sbjct: 223 SASWDRTIKVWRIADSKCLESIPAHDDAVNSV-VSTTEAIVFSGSADGTVKAW 274
Score = 27.1 bits (57), Expect = 7.7
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Frame = +1
Query: 112 SIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIHSSTKV 291
+I FS + + + + DQ Y K T M T+ ++ V + + KN A
Sbjct: 260 AIVFSGSADGTVKAWKRDQQGKYT--KHTLMQTLTKQESAVTALAVS--KNGAAVYFGSS 315
Query: 292 DDTIRYLSLHDN-KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
D + + Y GH K+ +CL SGS DKT+ +W
Sbjct: 316 DGLVNFWEREKQLNYGGILKGH--KLAVLCLEVAGSLVFSGSADKTICVW 363
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 30.3 bits (65), Expect = 0.82
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Frame = +1
Query: 70 KVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCE-KGTQMITVNSKKYGVDLIH 246
KV +V E I S+ S +G+ I +I ++D + Q + + + +I
Sbjct: 389 KVERVISEE-QPITSLSISGDGKFFIVNLSCQEIHLWDLAGEWKQPLKFSGHRQSKYVIR 447
Query: 247 FTHAK-NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFL-SGSLD 420
+++ +S D + +L + K + GH+ V + +P L S S D
Sbjct: 448 SCFGGLDSSFIASGSEDSQVYIWNLKNTKPLEVLSGHSMTVNCVSWNPKNPRMLASASDD 507
Query: 421 KTLRLWDLRSPN 456
+T+R+W PN
Sbjct: 508 QTIRIWGPGKPN 519
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/117 (17%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITV--NSKKYGVDLIHFTHAKNTAIHS 279
++ + +SP+ L++C + + ++D + G T N+ + V + +
Sbjct: 272 VSFVSWSPDDTKLLTCGNAEVLKLWDVDTGVLRHTFGNNNTGFTVSSCAWFPDSTRLVCG 331
Query: 280 STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
S+ + I N+ + KVV + ++P ++ ++ DK +R+ +L +
Sbjct: 332 SSDPERGIVMWDTDGNEIKAWRGTRIPKVVDLAVTPDGESMITVFSDKEIRILNLET 388
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 0.82
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Frame = +1
Query: 97 TDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKNTAIH 276
+D I+++ FS N + L+ S D ++ +YD ++ NS K + +H + H
Sbjct: 17 SDGISNLRFSNNSDHLLVSSWDKRVRLYD-------VSTNSLKG--EFLHGGAVLDCCFH 67
Query: 277 S-----STKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
S D +R + + K H K V + S ++GS DKT++ WD
Sbjct: 68 DDFSGFSVGADYKVRRIVFNVGKE-DILGTHDKAVRCVEYSYAAGQVITGSWDKTVKCWD 126
Query: 442 LR 447
R
Sbjct: 127 PR 128
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 61 RSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGT 198
+S+KV K + + + +SP+ LIS S D+ +I+D KG+
Sbjct: 41 QSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGS 86
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 352 HTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLM--HLSGRPVAAYDP 507
H K V+ + SP + +SGS+D + +WD+ + ++ H A+DP
Sbjct: 52 HRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDP 105
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 61 RSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGT 198
+S+KV K + + + +SP+ LIS S D+ +I+D KG+
Sbjct: 100 QSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGS 145
Score = 28.3 bits (60), Expect = 3.3
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDC--EKGTQMITVNSKK--YGVDLIHFTHAKNTAI 273
+N+I FSP+GE L S ++ ++ I+ + Q V+ + D++ + + A
Sbjct: 67 VNTIRFSPSGELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAY 126
Query: 274 HSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
S VD++ ++ + H V + P+ S S D+T R++
Sbjct: 127 LISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIY 181
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 352 HTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLM--HLSGRPVAAYDP 507
H K V+ + SP + +SGS+D + +WD+ + ++ H A+DP
Sbjct: 111 HRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDP 164
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 61 RSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGT 198
+S+KV K + + + +SP+ LIS S D+ +I+D KG+
Sbjct: 100 QSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGS 145
Score = 28.3 bits (60), Expect = 3.3
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDC--EKGTQMITVNSKK--YGVDLIHFTHAKNTAI 273
+N+I FSP+GE L S ++ ++ I+ + Q V+ + D++ + + A
Sbjct: 67 VNTIRFSPSGELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAY 126
Query: 274 HSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
S VD++ ++ + H V + P+ S S D+T R++
Sbjct: 127 LISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIY 181
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 352 HTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLM--HLSGRPVAAYDP 507
H K V+ + SP + +SGS+D + +WD+ + ++ H A+DP
Sbjct: 111 HRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDP 164
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 334 IRYFPGHTKKVVTMCLSPVEDTFLSG-SLDKTLRLWDLRS 450
++ GHT +V + +P D ++ S DKT+R+W+ S
Sbjct: 13 VQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQSS 52
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 334 IRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLW 438
I GH++ V + P D S S D T+++W
Sbjct: 132 IAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIW 166
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 29.9 bits (64), Expect = 1.1
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 5/126 (3%)
Frame = +1
Query: 76 AKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
AK FR + I + S +G + S D + IYD M + Y + + +
Sbjct: 106 AKHFRSHLGPIEGLAVSIDGLLCCTISNDHAVKIYDVVNYDMMAMIRLP-YIPGAVEWVY 164
Query: 256 AKNTAIHSSTKVDDTIRYLSLHD-----NKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLD 420
+ D ++ ++D N+ I H + M +PV DT +SG
Sbjct: 165 KQGDVKAKLAVSDRDSLFVHIYDPRSGSNEPIASKEIHMNPIKVMKYNPVSDTMISGDTK 224
Query: 421 KTLRLW 438
+ W
Sbjct: 225 GIIEYW 230
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 328 KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
K + GH P TF +G+ DKT R+WD+R+
Sbjct: 310 KTLETLSGHLDFSFASAWHPDGVTFSTGNQDKTCRVWDIRN 350
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 376 CLSPVEDTFL--SGSLDKTLRLWDLRSPNC 459
CLS ED L SGS DKTL++W L C
Sbjct: 250 CLSLNEDLGLLYSGSWDKTLKVWRLSDSKC 279
>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile: PF01764: Lipase
Length = 529
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +2
Query: 53 KLSEALKLPKYSVKIQTKLTV*IFLLMGRH*FHVAKMIKSLYTIVKKEHK*LRSTVKNTG 232
+L + LKL S+KI+ K + FL +H FH+ K K + + + + + +T
Sbjct: 23 RLKQKLKLAWKSIKIRVKSHLPGFLSTKKHLFHI-KSRKEEQDLSQVAQRICKISNDSTK 81
Query: 233 SI*YILHMPK 262
S+ ++L +PK
Sbjct: 82 SLAFLLQLPK 91
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice sites
at introns 4 and 6
Length = 1017
Score = 29.5 bits (63), Expect = 1.4
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGET-LISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAK 261
F E+ + S+DFS T L S S+D + +++ + + T+ + V + F+
Sbjct: 792 FIEHEKRAWSVDFSEACPTKLASGSDDCSVKLWNINERNCLGTIRNIA-NVCCVQFSPQS 850
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
+ + + T Y + GH K V+ +T ++ S D TL+LWD
Sbjct: 851 SHLLAFGSSDFRTYCYDLRNLRTPWCILSGHNK-AVSYAKFLDNETLVTASTDNTLKLWD 909
Query: 442 LRSPNCQGL 468
L+ GL
Sbjct: 910 LKKTTHGGL 918
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 328 KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
K + GH P TF +G+ DKT R+WD+R+
Sbjct: 308 KTLATLSGHLDFSFASAWHPDGFTFSTGNQDKTCRVWDIRN 348
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 31 KMMKLVDQVVRSFKVA-KVFRENTDKINSIDFSPNGETLI-SCSEDDQIVIYDCEKGTQM 204
K +KL D +R A F + +++ + ++P ET++ SC +++++D + +
Sbjct: 296 KTVKLFD--LRKLSTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
Query: 205 ITVNSKKYGVDLIHFTHAKNTA 270
TV + G + F H +T+
Sbjct: 354 QTVEDAEDGPPELLFIHGGHTS 375
Score = 28.7 bits (61), Expect = 2.5
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Frame = +1
Query: 142 LISCSEDDQIVIYDCEKGTQMITVNSKKY-----GVDLIHFTHAKNTAIHSSTKVDDTIR 306
L+S S+D QI ++D + ++++++ GV H ++ + S D +
Sbjct: 194 LLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
Query: 307 YLSLHD---NKYIRYFPGHTKKVVTMCLSPVEDTFLS-GSLDKTLRLWDLR 447
L +K ++ H+ +V + +P + ++ GS DKT++L+DLR
Sbjct: 254 IWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLR 304
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 106 INSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNS 219
++S+ F PNG + + ++ +I I+D K ++ T++S
Sbjct: 284 VSSVAFHPNGHLMATSGKERKIKIWDLRKFEEVQTIHS 321
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
GH P TF +G+ DKT R+WD R
Sbjct: 317 GHLDYSFASAWHPNGVTFATGNQDKTCRIWDTR 349
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
GH P TF +G+ DKT R+WD R
Sbjct: 311 GHLDYSFASAWHPNGVTFATGNQDKTCRIWDTR 343
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
GH V+ + P + +GS D LR+WD
Sbjct: 15 GHRHSVMDVSFHPSKSLLFTGSADGELRIWD 45
Score = 27.9 bits (59), Expect = 4.4
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Frame = +1
Query: 94 NTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDL--IHFTHAK-N 264
+++ + S+ + + + IS DD+IV+Y+ T T+ K+ ++ + T + +
Sbjct: 261 HSEPVLSLSVASSCDGGISGGADDKIVMYNLNHSTGSCTIR-KEITLERPGVSGTSIRVD 319
Query: 265 TAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDL 444
I ++ D IR + + H + SP + S S D T+ LW L
Sbjct: 320 GKIAATAGWDHRIRVYNYRKGNALAILKYHRATCNAVSYSPDCELMASASEDATVALWKL 379
Query: 445 RSPN 456
P+
Sbjct: 380 YPPH 383
>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
protein contains Pfam domain, PF05183: RNA dependent RNA
polymerase
Length = 927
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 49 DQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEK 192
++ +S + + + D N+ D +P+G + + C ED+ + +D EK
Sbjct: 818 NKTFKSTSILGLIFDTVDFHNAEDTTPSGISKLQCFEDEPVSEFDMEK 865
>At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutase 1
(GSA 1) / glutamate-1-semialdehyde aminotransferase 1
(GSA-AT 1) identical to GSA 1 [SP|P42799]
Length = 474
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 25 CIKMMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQM 204
CIKM VD+ +SF + K N + N S Q V+ D KG++M
Sbjct: 34 CIKMSVSVDEKKKSFSLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKM 93
Query: 205 ITVNSKKY 228
++ +Y
Sbjct: 94 WDIDGNEY 101
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLW--DLRSPNCQ-GLMHLSGRPV 492
GH V+ MC+ V + SGS DK++ LW ++ C+ G++H PV
Sbjct: 316 GHNMAVLCMCV--VGEMVCSGSADKSIGLWRREVTGMLCKFGVIHGHEGPV 364
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 376 CLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
CL+ SGS DKTL++W L C
Sbjct: 179 CLAVHAGIIYSGSWDKTLKVWRLSDLKC 206
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 376 CLSPVEDTFL--SGSLDKTLRLWDLRSPNC 459
CLS E+ L SGS DKTL++W L C
Sbjct: 254 CLSLNEELGLLYSGSWDKTLKVWRLSDSKC 283
>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
reverse transcriptase [Arabidopsis thaliana] GI:976278
Length = 365
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 319 HDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
H +Y+ +F +K +VT+ ++ ED L G+L +R W L+ P C
Sbjct: 274 HGLRYV-WFESDSKSLVTL-INNGEDHSLLGTLIYDIRHWMLKLPYC 318
>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 85 FRENTDKINSIDFSPNGETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHAKN 264
F +N D ++ + T +C + Y C + V+ +KYG ++ H +H+ +
Sbjct: 120 FPQNHDHKLKLEMVRSSFTCFTCGKGGSGYPYKCHECDLAFHVDCEKYGAEVNHPSHSLH 179
Query: 265 T 267
T
Sbjct: 180 T 180
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFL-SGSLDKTLRLW 438
+T I + T+ D +R + + GH V+++ S + L +G D +R W
Sbjct: 160 HTLIAAGTE-DVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFW 218
Query: 439 DLRSPNC 459
D+R C
Sbjct: 219 DIRRAGC 225
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 27.9 bits (59), Expect = 4.4
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +1
Query: 259 KNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSP-VEDTFLSGSLDKTLRL 435
+N I +S D ++ + K H KKV + + + LSGS D+T+ L
Sbjct: 225 ENRNIVASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAVAWNNYTPEVLLSGSRDRTVVL 284
Query: 436 WDLRSPNCQGLMHLSGRPV--AAYDP 507
D R P+ GL + V A+DP
Sbjct: 285 KDGRDPSNSGLKWSTEAKVEKLAWDP 310
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 27.9 bits (59), Expect = 4.4
Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Frame = +1
Query: 31 KMMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMI 207
K +K+ D + K+ +T ++ ++ ++ E L+S S D +V+ D + +
Sbjct: 256 KKVKVWDVATGTCKIT--MEHHTKEVQAVAWNHYAPEVLLSGSFDQTVVLKDGRQPSHSG 313
Query: 208 TVNSKKYGVDLI----HFTHAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFP--GHTKKVV 369
S V+ + H H+ ++ T +R S+ ++ F GH +
Sbjct: 314 FKWSVMSDVESLAWDPHSEHSFVVSLEDGTVKGFDVRQASISASESNPSFTINGHDEAAT 373
Query: 370 TMCLSPVEDTFLS-GSLDKTLRLWDL--RSPNC 459
++ + L+ GS D+T++LWDL P+C
Sbjct: 374 SVSYNISAPNLLATGSKDRTVKLWDLSNNEPSC 406
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 352 HTKKVVTMCLSP-VEDTFLSGSLDKTLRLWDLRSPNCQGLMH--LSGRPVAAYDP 507
HTK+V + + + LSGS D+T+ L D R P+ G +S A+DP
Sbjct: 275 HTKEVQAVAWNHYAPEVLLSGSFDQTVVLKDGRQPSHSGFKWSVMSDVESLAWDP 329
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 304 RYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRS 450
R +L Y R P + + +++ SP SGS D +R WD S
Sbjct: 181 RISNLEKLTYYRSLPRVSGRALSVTWSPDAKRIFSGSSDGLIRCWDATS 229
>At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase,
putative similar to mevalonate diphosphate decarboxylase
[Arabidopsis thaliana] gi|2288887|emb|CAA74700
Length = 419
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +1
Query: 295 DTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLMH 474
D +R L ++D+ + P H V T+ +SP D K + L R NC L
Sbjct: 28 DEVRILPVNDSISVTLDPDHLCTVTTVAVSPAFDRDRMWLNGKEISLSGSRYQNC--LRE 85
Query: 475 LSGRPVAAYDPE 510
+ GR D E
Sbjct: 86 IRGRAGDVEDME 97
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 27.9 bits (59), Expect = 4.4
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Frame = +1
Query: 82 VFRENTDKINSIDFSPNG-ETLISCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTHA 258
+F ++ ++SI F N +IS S D I + D EK +V Y D F+ +
Sbjct: 258 LFTPHSAPVSSIVFQQNSLSRVISSSYDGLIRLMDVEK-----SVFDLVYSTDEAIFSLS 312
Query: 259 KNTAIHSSTKVDDTIRYLSLHD---NKYIRYFPGHTKKVVTMCLSPVEDTFLS-GSLDKT 426
+ S ++ D K + ++ H +++ ++ +P ++ S D T
Sbjct: 313 QRPNDEQSLYFGQDYGVFNVWDLRAGKSVFHWELHERRINSIDFNPQNPHVMATSSTDGT 372
Query: 427 LRLWDLRS 450
LWDLRS
Sbjct: 373 ACLWDLRS 380
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 WD-40
repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 253 HAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLR 432
H ++ I + D TI+ ++ ++ GH+K++ + S V + +S D L
Sbjct: 874 HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 933
Query: 433 LWD 441
+W+
Sbjct: 934 VWN 936
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 WD-40
repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 253 HAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLR 432
H ++ I + D TI+ ++ ++ GH+K++ + S V + +S D L
Sbjct: 874 HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 933
Query: 433 LWD 441
+W+
Sbjct: 934 VWN 936
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 253 HAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLR 432
H ++ I + D TI+ ++ ++ GH+K++ + S V + +S D L
Sbjct: 885 HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944
Query: 433 LWD 441
+W+
Sbjct: 945 VWN 947
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 253 HAKNTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLR 432
H ++ I + D TI+ ++ ++ GH+K++ + S V + +S D L
Sbjct: 885 HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944
Query: 433 LWD 441
+W+
Sbjct: 945 VWN 947
>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 512
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 352 HTKKVVTMCLSPV-EDTFLSGSLDKTLRLWDLR 447
H +K+ ++ L PV E F + SLD + LW L+
Sbjct: 195 HKRKLRSLILCPVNEQLFATSSLDGMVSLWQLQ 227
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat; contains Pfam PF00069: Protein kinase domain;
contains PF02985: HEAT repeat; similar to adaptor protein
(GI:1817584) [Homo sapiens]; similar to VPS15 protein
(GI:6103009) [Pichia pastoris]
Length = 1494
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 364 VVTMCLSPVEDTFLSGSLDKTLRLWDLR 447
V ++ SP + F+SGS L LWDLR
Sbjct: 1236 VSSLVTSPCGNWFVSGSSRGVLTLWDLR 1263
>At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 447
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 328 KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNCQGLMHLSG 483
K I GH + P +G+ D T RLWD+R+ + Q L L G
Sbjct: 310 KVIHGLEGHLDYSFSSAWHPNGQILATGNQDTTCRLWDVRNLS-QSLKVLKG 360
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 292 DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPN 456
D +R + + I GH V + +P ++ SGS D T+R+W N
Sbjct: 249 DMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPAN 303
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 292 DDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPN 456
D +R + + I GH V + +P ++ SGS D T+R+W N
Sbjct: 249 DMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPAN 303
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +1
Query: 274 HSSTKVDD---TIRYLSLHDN-KYIRYFPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
H + DD I Y+S D Y R P T + +++ S SGS D +R WD
Sbjct: 167 HLAAACDDGCVRIYYISESDKLTYYRSLPRVTGRALSVTWSADAQRIFSGSSDGLIRCWD 226
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 262 NTAIHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTMCLSPVEDTFL-SGSLDKTLRLW 438
+T I + T D +R + + GH V+++ S + L +G D +R W
Sbjct: 160 HTLIAAGTD-DVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFW 218
Query: 439 DLRSPNC 459
D+R C
Sbjct: 219 DIRRAGC 225
>At5g38590.2 68418.m04666 F-box family protein contains F-box domain
Pfam:PF00646
Length = 410
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 164 SSSLHEINVSPLGEKSILLILSVFSRNTLATLKLRT 57
S +H++++ E + + S F+ +L TLKLR+
Sbjct: 101 SRHVHDLDIDHFSENENIFLSSFFACKSLVTLKLRS 136
>At5g38590.1 68418.m04667 F-box family protein contains F-box domain
Pfam:PF00646
Length = 289
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 164 SSSLHEINVSPLGEKSILLILSVFSRNTLATLKLRT 57
S +H++++ E + + S F+ +L TLKLR+
Sbjct: 101 SRHVHDLDIDHFSENENIFLSSFFACKSLVTLKLRS 136
>At5g27240.1 68418.m03249 DNAJ heat shock N-terminal
domain-containing protein
Length = 1104
Score = 27.1 bits (57), Expect = 7.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 240 DTFYTCQKHCNSQFHQSRRHNTVFI 314
DTF+TC +HC ++ R++ + +
Sbjct: 157 DTFWTCCEHCGYRYKYLRKYVNILL 181
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWDLRSPNC 459
GH + ++ L + SGS D ++R+WD S C
Sbjct: 255 GHEGPITSLALDMT--SIFSGSWDMSVRIWDRSSMKC 289
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 343 FPGHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
F GH V ++C SGS D TL +W+
Sbjct: 259 FTGHCGIVSSLCFREGTAELFSGSYDGTLSIWN 291
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +1
Query: 406 SGSLDKTLRLWDL--RSPNC 459
+GS+DK+++LWDL P+C
Sbjct: 422 TGSMDKSVKLWDLSNNEPSC 441
>At2g20310.1 68415.m02372 expressed protein
Length = 430
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 34 MMKLVDQVVRSFKVAKVFRENTDKINSIDFSPNGETLISCSEDDQIVIYDCE 189
+M+ VD S + +V E +NS PN + +DD VI DC+
Sbjct: 34 VMEPVDDTSDSTDIVEVLSEVRGGVNSQYRKPNSSNQ-ALEDDDDCVILDCD 84
>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 836
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 349 GHTKKVVTMCLSPVEDTFLSGSLDKTLRLWD 441
GH + TM +S ++ +G LD LRLWD
Sbjct: 378 GH-RPSATMFVSLIDSYAKAGKLDTALRLWD 407
>At1g69150.1 68414.m07911 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 517
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 148 SCSEDDQIVIYDCEKGTQMITVNSKKYGVDLIHFTH 255
+C +D Y C + VN +K+ ++ HF+H
Sbjct: 113 TCGKDSDGYSYKCHECDLKFHVNCEKHPAEVTHFSH 148
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,909,037
Number of Sequences: 28952
Number of extensions: 258872
Number of successful extensions: 1224
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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