Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565...    27   6.9  
06_01_0723 - 5287864-5287885,5287971-5288043,5288521-5288626,528...    27   9.1  

>01_05_0251 +
           19952882-19955459,19956209-19956245,19956370-19956586,
           19957063-19957221,19957397-19957516,19957609-19957719
          Length = 1073

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 277 LRICIITFLLLHLISLVKFLSKLESFQNYV 188
           L  C++TF+  ++ +LV F+S L +F+  V
Sbjct: 850 LNDCLVTFIERNIFALVLFISPLPTFKRIV 879


>06_01_0723 -
           5287864-5287885,5287971-5288043,5288521-5288626,
           5288829-5288891,5290165-5290249,5290337-5290377,
           5291260-5291323,5291647-5291716,5291886-5291960,
           5292070-5292164,5293671-5293771,5293852-5293874,
           5293956-5294031,5294229-5294322,5294493-5294548,
           5296204-5296327,5296607-5296743
          Length = 434

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +1

Query: 133 FLFFFWLCAVFRNYMNSERRNFENFLILTKT*QEILNATAK--MLLYIFEVYSYLNSKSK 306
           F F FW+ A    Y+ +    F N LIL      ++N   +  ML+Y+   +++L     
Sbjct: 185 FTFCFWVIAAVPFYLATWEHFFTNTLIL-----PLINGPTEGLMLIYLSHSFTFLTGAEW 239

Query: 307 RSQTILFKSIVRCVRLIALPYT*D 378
            +Q   F+  +  +  + LP+  D
Sbjct: 240 WAQD--FRKSIPLLSWVPLPFIPD 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,425,519
Number of Sequences: 37544
Number of extensions: 164873
Number of successful extensions: 288
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)