Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF039053-12|AAC25872.3|  289|Caenorhabditis elegans Serpentine r...    27   8.1  

>AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical
           protein Y57A10C.8 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 275 SNMYNNIFAVAFNISC*VFVKIRKFSKLRLSLFM*LRKTAQSQKKNKKISCDL 117
           SN  ++ F    ++   VFV IRKFSK R+  F   RKT+   +K  +I+  +
Sbjct: 201 SNTLSSFFVAIMSVL--VFVGIRKFSKKRVGTFT-TRKTSTVFRKANRITAGI 250


>AF039053-12|AAC25872.3|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 18 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 265 IITFLLLHLISLVKFLSKLESFQNYVFHY 179
           ++ F LL +ISL  F +    +QN++F++
Sbjct: 59  LVIFYLLVVISLSYFWNTFADYQNFIFYF 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,312,744
Number of Sequences: 27780
Number of extensions: 185316
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)