Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309E01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               31   0.76 
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 418

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +1

Query: 67  PFNIV*TIICMYVCIYVCMYL*L*LCIYVYTYI 165
           PF+++   + +YV +YV +Y+ + + +YVY Y+
Sbjct: 259 PFSMLRVYVYVYVYVYVYVYVYVYVYVYVYVYV 291


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 91  ICMYVCIYVCMYL*L*LCIYVYTY 162
           +  Y+ IY+ +Y+ + + IY+YTY
Sbjct: 7   VTFYIYIYIYIYIYIYIYIYIYTY 30



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 85  TIICMYVCIYVCMYL*L*LCIYVYTYI 165
           T + +YV +YV +Y+ + + +YVY YI
Sbjct: 53  TYVYVYVYVYVYVYVYVYVYVYVYIYI 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,922,184
Number of Sequences: 59808
Number of extensions: 172323
Number of successful extensions: 341
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)