Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309D11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.97
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 27 1.7
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 2.2
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.0
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 3.9
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 25 5.2
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 25 5.2
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 25 9.0
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 9.0
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 9.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 7 NSARGVIKAAAPINEE-SNGPAKPPPMRVSELPLYETPHADYAEYL 141
N A I A P NEE + GP P SE +++TP + + L
Sbjct: 551 NDADKAIVAEGPNNEEETKGPVIPETQETSEQQVHKTPSPEKQKVL 596
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 434 PAPAYIILLINPPLSPNMKPVRP 366
P+PA+ + L +P +PN+ PV P
Sbjct: 255 PSPAHPVDLSSPETAPNISPVSP 277
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = -1
Query: 422 YIILLINPPLSPNMKPVRPPIATAPYL-----TSLFSSSRK 315
Y ++ P N+ P+ PP A+ PY TSLF S RK
Sbjct: 311 YTSNIVENPSEDNLSPLPPP-ASGPYSQEEEETSLFKSQRK 350
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 464 GKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPP 363
G+ + A+ YI+L + PP SP P RPP
Sbjct: 415 GRLLAAAAIARICTYIMLYLKPPSSP--WPTRPP 446
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 58 NGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQTFVD 237
N P+ P + PLY +P + A A Q+ ++ + P +++Q+ F D
Sbjct: 318 NSPSVSKPPSSATGPLYHSPQSSLTNSSVASADVQERTHNTNGASP----IQDQISEFTD 373
Query: 238 Q 240
Q
Sbjct: 374 Q 374
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 22 VIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYL 141
VI A+ I E SN PPP V+ T +Y EYL
Sbjct: 34 VIYNASNITEVSNSTTVPPPPFVNTTAPNGTCLGNYNEYL 73
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +1
Query: 199 VRALREQVQT----FVDQTDFIKHSIQDNYHEFQDKSEWIFKYLREEENK 336
VR L+E +T ++D ++I+ +QD + Q + + ++EEE K
Sbjct: 23 VRHLQESTETDTSRYMDMENYIQKRVQDELKQLQLRQKKAIDAIQEEEWK 72
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 244 DFIKHSIQDNYHEFQDKSE 300
DF+ H D Y EF+++ E
Sbjct: 140 DFLSHPFWDKYLEFEERQE 158
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/52 (23%), Positives = 23/52 (44%)
Frame = +1
Query: 19 GVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSY 174
G +K++A + P+ PPP L T Y + ++ + H++ Y
Sbjct: 152 GTVKSSASPFVPNQNPSAPPPPPQEYRQLNVTDALSYLDLVKLQFHQEPEIY 203
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +1
Query: 1 RPNSARGVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADY 129
RP G K AA N P S +P+Y TP Y
Sbjct: 555 RPEGNSGSAKKAAAANPMIPSIVLPNSAMPSAMPMYPTPTMPY 597
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,715
Number of Sequences: 5004
Number of extensions: 45203
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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