Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309D11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 33 0.18
06_03_0854 + 25400855-25403741,25406174-25407708 29 2.3
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 29 3.0
10_08_0328 - 16805296-16806121,16806493-16807274 28 4.0
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 28 4.0
02_02_0581 + 11770511-11770527,11770754-11771612,11771652-117717... 28 4.0
01_04_0012 - 15075505-15075636,15075719-15075784 28 4.0
01_03_0259 - 14312197-14312259,14312384-14312456,14312651-143127... 28 4.0
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340 28 5.2
07_03_1159 - 24427896-24428288 28 5.2
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 6.9
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 27 6.9
02_04_0421 - 22756903-22757384,22757585-22758047 27 6.9
06_01_0486 - 3455030-3455770 27 9.1
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 27 9.1
03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843 27 9.1
02_04_0277 - 21494616-21494747,21494830-21494916,21495025-214951... 27 9.1
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 455 TSPIAV-VPAPAYIILLINPPLSPNMKPVRPPIATAPYLTS 336
T+P+A+ PAP + + PPL P PP+AT P L +
Sbjct: 421 TAPLALRAPAPHLCVSRMPPPLVPTPPAHAPPVATPPTLAT 461
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 434 PAPAYIILLINPPLSPNMKPVRPPIATAP 348
PAPA ++LL PP S ++ PV +A P
Sbjct: 226 PAPAPLLLLPAPPPSSDVSPVTVQVAAPP 254
>02_01_0622 -
4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Frame = +1
Query: 7 NSARGVIKAAAPINEESNGPAKPPPMRVSELPLYETPH---ADYAEYLE 144
N GV A EE P PP R LPL P D AE LE
Sbjct: 170 NEGHGVSSKIAAPKEEHVTPTMDPPSRCEHLPLEVAPSNLVTDKAELLE 218
>10_08_0328 - 16805296-16806121,16806493-16807274
Length = 535
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 125 SACGVSYNGS--SDTRMGGGFAGPFDSSLIGAAALIT 21
SA G SYN S S G GF G F S+L G L++
Sbjct: 413 SALGTSYNCSLHSVYLAGNGFTGVFPSTLEGCKTLVS 449
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 437 VPAPAYIILLINPPLSPNMKPVRPPIATAPY 345
+P P ++L + PP P + P+ P +A A +
Sbjct: 85 LPLPPPVLLYLQPPPPPPLLPLLPKVAAATF 115
>02_02_0581 +
11770511-11770527,11770754-11771612,11771652-11771749,
11772903-11773631,11775159-11775231,11775698-11776066,
11777009-11777038
Length = 724
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +1
Query: 25 IKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVR 204
I A N+ G P R P T H YAEY+ + Y+K + V
Sbjct: 298 ISANQDTNKNDIGVDSLPTKRGVVFPFRNTHHVSYAEYIRDLEFKPLIEYIKHTPVMLVG 357
Query: 205 ALREQV-QTFVDQTDFI 252
R++V + ++ F+
Sbjct: 358 PTRQRVYRLMTEEAKFV 374
>01_04_0012 - 15075505-15075636,15075719-15075784
Length = 65
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 389 PNMKPVRPPIATAPYLTSLFSSSRKYLKIH 300
P +P RPP A AP L L +S +IH
Sbjct: 33 PRRRPCRPPTADAPPLQQLRPNSAWMFRIH 62
>01_03_0259 -
14312197-14312259,14312384-14312456,14312651-14312754,
14313073-14313192,14313278-14313364,14313925-14314023,
14314110-14314203,14314298-14314368,14315258-14316040
Length = 497
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 64 PAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALR 213
P+ PPP S + P + Y+ A A TSY S LPP R R
Sbjct: 51 PSPPPPHPSSSSAAAQGPSSSYSAAAAAGAGGASTSYASS--LPPSRLRR 98
>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
Length = 369
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 64 PAKPP-PMRVSELPLYETPHADYAEYLEAKAHEQKT 168
P +PP P +S LP Y T AD E E +A+E+++
Sbjct: 17 PTRPPQPPSLSLLPAYVTKAADDEECEEWQAYEEES 52
>07_03_1159 - 24427896-24428288
Length = 130
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 7 NSARGVIKAAAPINE--ESNGPAKPPPMRVSELPLYETPH 120
++AR + + AAP E E P PP + V ELP E PH
Sbjct: 26 SAARYLEEEAAPKEEYPELPKPELPPHLAVPELPKPELPH 65
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 455 TSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 348
TS ++PAP L +P S N+ P++PP AT P
Sbjct: 732 TSNNNMMPAPQNTNQLSSPTASSNLPPMQPP-ATRP 766
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 455 TSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 348
TS ++PAP L +P S N+ P++PP AT P
Sbjct: 820 TSNNNMMPAPQSTNQLSSPTTSSNLPPMQPP-ATRP 854
>02_04_0421 - 22756903-22757384,22757585-22758047
Length = 314
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +2
Query: 98 YHYMKLHMPIMLSILKPKPMSRRQVTLNQHYYLQYVL 208
Y +++ HM ++ + P+P+ R + ++H+ L+ V+
Sbjct: 174 YPHVRYHMDVLGGVRAPQPVGREEKFNHRHFSLRSVI 210
>06_01_0486 - 3455030-3455770
Length = 246
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 449 PIAVVPAPAYIILLINPPLSPNMKPVRPPIATAPYL 342
P P P Y+ I PP P + P PP + PY+
Sbjct: 102 PYIPPPTPPYVPPYIPPPTPPYVPPPTPP-SPPPYV 136
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 467 SGKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 348
S K SP+A P P + + + PP P + P + P
Sbjct: 7 SVKPPSPVAAAPPPPPVQVPVPPPPPPPLPPAAAAVEPLP 46
>03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843
Length = 588
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/65 (35%), Positives = 28/65 (43%)
Frame = -1
Query: 209 RARTGGNNADLR*LVFCSWALASRYSA*SACGVSYNGSSDTRMGGGFAGPFDSSLIGAAA 30
RA GG LV W L S S A G+ D R+GGGFA +++ A
Sbjct: 466 RAAAGGER-----LVLVDWVLRSWRSGEIA------GAVDARLGGGFAAGEAEAMLKLAL 514
Query: 29 LITPR 15
L T R
Sbjct: 515 LCTHR 519
>02_04_0277 -
21494616-21494747,21494830-21494916,21495025-21495157,
21495267-21495540,21495829-21495955,21496048-21496311
Length = 338
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 1 RPNSARGVIKAAAPI-NEESNGPAKPPP 81
RPN V+KA P+ N + GPA+PPP
Sbjct: 311 RPNMTI-VVKAIQPLLNTKPAGPAEPPP 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,811,782
Number of Sequences: 37544
Number of extensions: 314087
Number of successful extensions: 846
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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