Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309D11f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.047
SB_44459| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 32 0.25
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 32 0.25
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_56578| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_3673| Best HMM Match : CT20 (HMM E-Value=1.9) 29 1.8
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83) 28 4.1
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_54895| Best HMM Match : S1 (HMM E-Value=4.3) 27 7.1
SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_56129| Best HMM Match : rve (HMM E-Value=2.3e-12) 27 9.4
SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12) 27 9.4
SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 55 SNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQTFV 234
++G + P ELP++E H Y + +Q + ++ ++PPV + + +
Sbjct: 683 TSGIGECPQRMEIELPIFEETHLQYTSWKSVMDDKQLDLHFRTLIIPPVTVMNHSILRGL 742
Query: 235 DQT 243
D+T
Sbjct: 743 DET 745
>SB_44459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +1
Query: 55 SNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQTFV 234
++G + P ELP++ H Y + ++Q + ++ ++PPV + + +
Sbjct: 21 TSGIGECPQRMEIELPIFGETHLQYTSWKSVMDNKQLDLHFRTLIIPPVTVMNHSILRGL 80
Query: 235 DQT 243
D+T
Sbjct: 81 DET 83
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +1
Query: 55 SNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQTFV 234
++G + P ELP++ H YA + +Q + + ++PPV + + +
Sbjct: 2105 TSGIGECPQRMEIELPIFGETHLQYASWKSVMNDKQLDLHFRMLIIPPVTVMNHSILHGL 2164
Query: 235 DQT 243
D+T
Sbjct: 2165 DET 2167
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +1
Query: 55 SNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQTFV 234
++G + P ELP++ H YA + +Q + + ++PPV + + +
Sbjct: 62 TSGIGECPQRMEIELPIFGETHLQYASWKSVMNDKQLDLHFRMLIIPPVTVMNHSILHGL 121
Query: 235 DQT 243
D+T
Sbjct: 122 DET 124
>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1437
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = +1
Query: 55 SNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQTFV 234
++G + P ELP++ H Y + +Q + ++ ++PPV + + +
Sbjct: 1260 TSGIGECPQHMEIELPIFGETHLQYTSWKSVMDDKQLDLHFRTLIIPPVTVMNHSILRGL 1319
Query: 235 DQT 243
D+T
Sbjct: 1320 DET 1322
>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 404 NPPLSPNMKPVRPPIATAPYLTSLFSS 324
N PL P+ + VRPP AP LT SS
Sbjct: 321 NTPLGPHGRSVRPPTRVAPLLTRRISS 347
>SB_56578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = +1
Query: 1 RPNSARGVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLK 180
R SA V + A I E GPA P+ +P + T H DY++ ++
Sbjct: 958 RTKSAAVVFRELAGIYAE--GPASNSPIPTLPIPHHHTTHHDYSKPQHNTNTHLSPTHRH 1015
Query: 181 SALLPPVRALREQV 222
+ LPP L Q+
Sbjct: 1016 THYLPPYTFLHSQL 1029
>SB_3673| Best HMM Match : CT20 (HMM E-Value=1.9)
Length = 183
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/63 (19%), Positives = 29/63 (46%)
Frame = +1
Query: 55 SNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQTFV 234
++G + P EL ++ H Y + +Q + ++ ++PPV ++ + +
Sbjct: 21 TSGIGECPQRMEIELAIFGETHLQYTSWKSVMDDKQLDLHFRTLIIPPVTVMKHSILRGL 80
Query: 235 DQT 243
D+T
Sbjct: 81 DET 83
>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
Length = 957
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 148 KAHEQKTSYLKSALLPPVRALREQVQTFVDQTDFIKHSIQDNYHEFQDKSEWIFKYLREE 327
+ ++K + +K L ++ LR VQT ++Q + + HEF E K + E
Sbjct: 3 REEDKKFADIKHKLRRDIKNLRSTVQTMIEQNSQVPDLEKLARHEFNMDEEERHKMVAEG 62
Query: 328 ENK 336
E K
Sbjct: 63 EEK 65
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -1
Query: 461 KQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 348
K+TSP PAPA P P +KP R +ATAP
Sbjct: 213 KKTSPTPPRPAPARDRAASGPGPKPAVKP-RDRLATAP 249
>SB_54895| Best HMM Match : S1 (HMM E-Value=4.3)
Length = 479
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 446 IAVVPAPAYIILLINPPLSPNMKP 375
+ ++P+PA + L+ PP SP +P
Sbjct: 324 VGLLPSPAGVTLISTPPASPTPRP 347
>SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 52 ESNGPAKPPPMRVSELPLYETPHADYAEYLEAK 150
++N P PPP+ P+YE H D+ + A+
Sbjct: 255 DTNHPPPPPPVGHELRPIYERFHLDWHPFDHAR 287
>SB_56129| Best HMM Match : rve (HMM E-Value=2.3e-12)
Length = 308
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 76 PPMRVSELPLYETPHADYAEYLEAKAHE-QKTSYLKSALLPPVRALREQVQTFVDQTDFI 252
P RVSE P + D+A + K+HE K Y+ RAL ++ + F+
Sbjct: 106 PEFRVSEAPPFSKTGVDFAGPVYIKSHEGMKKMYIALFTCSVTRALHLELTEDLSTRSFL 165
>SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)
Length = 347
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 49 EESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLP 195
+E+N PP RV + AD A + K H Q T LK+A P
Sbjct: 106 DENNSLLPPPDFRVDADKGFNFSFADDAFVCQKKNHFQITVSLKTATTP 154
>SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +1
Query: 199 VRALREQVQTFVDQTDFIKHSIQDNYHEFQDKSEWIFKY---LREEENKE 339
V++LR+QVQ+ ++ + H+I + E + ++ I L+EE++KE
Sbjct: 149 VQSLRQQVQSTQNEVKILSHTITNREAELKIEANKIVSLTHELQEEKSKE 198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.130 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,136
Number of Sequences: 59808
Number of extensions: 335249
Number of successful extensions: 845
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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