Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309D11f
(521 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT021237-1|AAX33385.1| 226|Drosophila melanogaster RH01253p pro... 37 0.019
AY060852-1|AAL28400.1| 226|Drosophila melanogaster GM03014p pro... 37 0.019
AE014297-2155|AAF55278.1| 226|Drosophila melanogaster CG5903-PA... 37 0.019
BT011427-1|AAR99085.1| 1253|Drosophila melanogaster SD06669p pro... 33 0.31
BT001300-1|AAN71055.1| 1253|Drosophila melanogaster AT12326p pro... 33 0.31
AE014298-1307|AAF46467.2| 370|Drosophila melanogaster CG15370-P... 31 0.72
BT009971-1|AAQ22440.1| 784|Drosophila melanogaster RE64209p pro... 30 2.2
AF541948-1|AAN34650.1| 427|Drosophila melanogaster gag protein ... 30 2.2
AE014297-1693|AAF54952.2| 1027|Drosophila melanogaster CG14372-P... 30 2.2
AE014297-1164|AAF54536.2| 784|Drosophila melanogaster CG14681-P... 30 2.2
AY119556-1|AAM50210.1| 1272|Drosophila melanogaster GH28840p pro... 29 2.9
AE014298-1554|AAF48000.3| 3539|Drosophila melanogaster CG11122-P... 29 2.9
BT003270-1|AAO25027.1| 926|Drosophila melanogaster LD20211p pro... 29 3.8
AY094842-1|AAM11195.1| 883|Drosophila melanogaster RE01745p pro... 29 3.8
AY070576-1|AAL48047.1| 527|Drosophila melanogaster RE12101p pro... 29 3.8
AE014297-4274|AAO41609.1| 494|Drosophila melanogaster CG1520-PC... 29 3.8
AE014297-4273|AAN14303.1| 527|Drosophila melanogaster CG1520-PB... 29 3.8
AE014297-4272|AAF56819.1| 527|Drosophila melanogaster CG1520-PA... 29 3.8
AE014296-1714|AAN11951.1| 1253|Drosophila melanogaster CG16711-P... 29 3.8
AE014296-1713|AAF50220.2| 1473|Drosophila melanogaster CG16711-P... 29 3.8
AE014296-1380|AAF50480.2| 883|Drosophila melanogaster CG13676-P... 29 3.8
AE014296-66|AAF47366.1| 926|Drosophila melanogaster CG7008-PA p... 29 3.8
L05080-1|AAA28420.1| 873|Drosophila melanogaster calphotin prot... 28 6.7
AY069617-1|AAL39762.1| 787|Drosophila melanogaster LD38414p pro... 28 6.7
AY058315-1|AAL13544.1| 864|Drosophila melanogaster GH08002p pro... 28 6.7
AE014298-261|AAF45669.2| 787|Drosophila melanogaster CG14801-PB... 28 6.7
AE014297-1457|AAF54754.1| 864|Drosophila melanogaster CG4795-PB... 28 6.7
AE014297-1456|AAF54755.1| 842|Drosophila melanogaster CG4795-PA... 28 6.7
AY050239-1|AAK84938.1| 440|Drosophila melanogaster SD02309p pro... 28 8.8
AE014298-757|AAN09145.1| 440|Drosophila melanogaster CG3208-PB,... 28 8.8
AE014298-756|AAF46047.1| 494|Drosophila melanogaster CG3208-PA,... 28 8.8
>BT021237-1|AAX33385.1| 226|Drosophila melanogaster RH01253p
protein.
Length = 226
Score = 36.7 bits (81), Expect = 0.019
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Frame = +1
Query: 85 RVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQT----FVDQTDFI 252
R SELP+Y + + + H + S L L VR +RE+VQ+ DQ +
Sbjct: 37 RPSELPIYGSLRKTEPK---PERHPPQDSVLHKNLEAGVRYVREEVQSGYKAVADQAGIV 93
Query: 253 KHSIQDNYHEFQDKSEWIFKYLREEENKEVRYGAVAMXXXXXXXXXXXXXXXXXXXYAGA 432
H ++ Q + L E +N R GA+ + Y+G
Sbjct: 94 GHYVETAKAHTQSTIDM----LNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGI 149
Query: 433 GTTAMGLVCFPEDTKE 480
G A+ +C+P +E
Sbjct: 150 GAGAVASMCYPRQAEE 165
>AY060852-1|AAL28400.1| 226|Drosophila melanogaster GM03014p
protein.
Length = 226
Score = 36.7 bits (81), Expect = 0.019
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Frame = +1
Query: 85 RVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQT----FVDQTDFI 252
R SELP+Y + + + H + S L L VR +RE+VQ+ DQ +
Sbjct: 37 RPSELPIYGSLRKTEPK---PERHPPQDSVLHKNLEAGVRYVREEVQSGYKAVADQAGIV 93
Query: 253 KHSIQDNYHEFQDKSEWIFKYLREEENKEVRYGAVAMXXXXXXXXXXXXXXXXXXXYAGA 432
H ++ Q + L E +N R GA+ + Y+G
Sbjct: 94 GHYVETAKAHTQSTIDM----LNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGI 149
Query: 433 GTTAMGLVCFPEDTKE 480
G A+ +C+P +E
Sbjct: 150 GAGAVASMCYPRQAEE 165
>AE014297-2155|AAF55278.1| 226|Drosophila melanogaster CG5903-PA
protein.
Length = 226
Score = 36.7 bits (81), Expect = 0.019
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Frame = +1
Query: 85 RVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQT----FVDQTDFI 252
R SELP+Y + + + H + S L L VR +RE+VQ+ DQ +
Sbjct: 37 RPSELPIYGSLRKTEPK---PERHPPQDSVLHKNLEAGVRYVREEVQSGYKAVADQAGIV 93
Query: 253 KHSIQDNYHEFQDKSEWIFKYLREEENKEVRYGAVAMXXXXXXXXXXXXXXXXXXXYAGA 432
H ++ Q + L E +N R GA+ + Y+G
Sbjct: 94 GHYVETAKAHTQSTIDM----LNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGI 149
Query: 433 GTTAMGLVCFPEDTKE 480
G A+ +C+P +E
Sbjct: 150 GAGAVASMCYPRQAEE 165
>BT011427-1|AAR99085.1| 1253|Drosophila melanogaster SD06669p
protein.
Length = 1253
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -1
Query: 473 VSSGKQTSPIAVVPA--PAYI-ILLINPPLSPNMKPVRPPIATAPYL 342
+ + + S AVVPA PA I I +NPP+SP + + PP+ P L
Sbjct: 110 IKTEPKCSSEAVVPAAAPAIIPIPALNPPISPQIAALNPPLPEEPTL 156
>BT001300-1|AAN71055.1| 1253|Drosophila melanogaster AT12326p
protein.
Length = 1253
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -1
Query: 473 VSSGKQTSPIAVVPA--PAYI-ILLINPPLSPNMKPVRPPIATAPYL 342
+ + + S AVVPA PA I I +NPP+SP + + PP+ P L
Sbjct: 110 IKTEPKCSSEAVVPAAAPAIIPIPALNPPISPQIAALNPPLPEEPTL 156
>AE014298-1307|AAF46467.2| 370|Drosophila melanogaster CG15370-PA
protein.
Length = 370
Score = 31.5 bits (68), Expect = 0.72
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +1
Query: 100 PLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQTFVDQTDFIKHSIQDNYH 279
PL+ + HADY + + A +Y K A PP +++V T+ I+ + + +
Sbjct: 97 PLHMSEHADYLNHAKELADHLTETYAKKAAPPPPPPPKKKVNTYT----IIEEQHRPHGY 152
Query: 280 EFQDKSE 300
+++D E
Sbjct: 153 DYEDHHE 159
>BT009971-1|AAQ22440.1| 784|Drosophila melanogaster RE64209p
protein.
Length = 784
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 172 YLKSALLPPVRALREQVQTFVDQTDFIKHSIQDNYHEFQDKSEWI--FKYLREEENKEVR 345
Y+ L+P + +R + TFV + I YH F + + +++ REEE K VR
Sbjct: 577 YINGLLIPEIHVVRGKTYTFVVEGG-NNPDIPAKYHPFYISDDPVGGYEHKREEEKKAVR 635
>AF541948-1|AAN34650.1| 427|Drosophila melanogaster gag protein
protein.
Length = 427
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 32 RPPLSTRNQMVPRSLHPCGYRNYHYMKLH-MPIMLSILKPKPMSRRQVTLNQH 187
R P+S +PR+ +P + Y Y +LH P + I +P+P++ RQ T +Q+
Sbjct: 242 RQPISYIPPQLPRT-NPNPFSQYQYRQLHPQPNVSVIAQPRPLN-RQHTFDQN 292
>AE014297-1693|AAF54952.2| 1027|Drosophila melanogaster CG14372-PB
protein.
Length = 1027
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 43 INEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQV 222
+N E GP+ P +R+ P+ T D+ E L A HE + PP + +
Sbjct: 474 VNSEGKGPSNPVTLRIRYAPICAT---DHEELLGALKHETLPLKCEVDSSPPADSFQWTF 530
Query: 223 QTFVDQTD 246
+ +QT+
Sbjct: 531 NSSGEQTE 538
>AE014297-1164|AAF54536.2| 784|Drosophila melanogaster CG14681-PB,
isoform B protein.
Length = 784
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 172 YLKSALLPPVRALREQVQTFVDQTDFIKHSIQDNYHEFQDKSEWI--FKYLREEENKEVR 345
Y+ L+P + +R + TFV + I YH F + + +++ REEE K VR
Sbjct: 577 YINGLLIPEIHVVRGKTYTFVVEGG-NNPDIPAKYHPFYISDDPVGGYEHKREEEKKAVR 635
>AY119556-1|AAM50210.1| 1272|Drosophila melanogaster GH28840p
protein.
Length = 1272
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 452 SPIAVVPAPAYIILLINPPLSPNMKPVRPPIATA 351
SP +P PA L + PP SP+ P PP A A
Sbjct: 308 SPSPSLPPPASPSLSLPPPASPSPSPSPPPPAEA 341
>AE014298-1554|AAF48000.3| 3539|Drosophila melanogaster CG11122-PA
protein.
Length = 3539
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 452 SPIAVVPAPAYIILLINPPLSPNMKPVRPPIATA 351
SP +P PA L + PP SP+ P PP A A
Sbjct: 2575 SPSPSLPPPASPSLSLPPPASPSPSPSPPPPAEA 2608
>BT003270-1|AAO25027.1| 926|Drosophila melanogaster LD20211p
protein.
Length = 926
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +1
Query: 37 APINEESNGPAKPPPMRVSELPLYETPHA-DYAEYLEAKAHEQKTSYLKSALLPP 198
A + + K PP + PLYE PH D E+L K +K + PP
Sbjct: 386 AVVGTDGEEIVKAPPRGKNYRPLYEIPHMFDAREFLRKKLINKKVQCNLDYISPP 440
>AY094842-1|AAM11195.1| 883|Drosophila melanogaster RE01745p
protein.
Length = 883
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 40 PINEESNGPAKPPPMRVSELPLYETPHADYAEY-LEAKAHEQKTSYLKSALLPPVRALRE 216
P++EE + PA+P P+R + PL A+ E + +E+ + + +A P+R R
Sbjct: 506 PVDEEYDEPAEPEPLRKRKRPLAPRSRVPAADVDFEDEEYEESPAPVSTA--APLRNQRL 563
Query: 217 QVQT 228
+ +T
Sbjct: 564 RAKT 567
>AY070576-1|AAL48047.1| 527|Drosophila melanogaster RE12101p
protein.
Length = 527
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 64 PAKPPPMRVSELPLYETPHA 123
P PPPM V E+P+ T HA
Sbjct: 395 PPPPPPMPVGEIPVITTTHA 414
>AE014297-4274|AAO41609.1| 494|Drosophila melanogaster CG1520-PC,
isoform C protein.
Length = 494
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 64 PAKPPPMRVSELPLYETPHA 123
P PPPM V E+P+ T HA
Sbjct: 362 PPPPPPMPVGEIPVITTTHA 381
>AE014297-4273|AAN14303.1| 527|Drosophila melanogaster CG1520-PB,
isoform B protein.
Length = 527
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 64 PAKPPPMRVSELPLYETPHA 123
P PPPM V E+P+ T HA
Sbjct: 395 PPPPPPMPVGEIPVITTTHA 414
>AE014297-4272|AAF56819.1| 527|Drosophila melanogaster CG1520-PA,
isoform A protein.
Length = 527
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 64 PAKPPPMRVSELPLYETPHA 123
P PPPM V E+P+ T HA
Sbjct: 395 PPPPPPMPVGEIPVITTTHA 414
>AE014296-1714|AAN11951.1| 1253|Drosophila melanogaster CG16711-PB,
isoform B protein.
Length = 1253
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -1
Query: 473 VSSGKQTSPIAVVPAPAYIILLI---NPPLSPNMKPVRPPIATAPYL 342
+ + + S AVVPA A I I NPP+ P + + PP+ P L
Sbjct: 110 IKTEPKCSSEAVVPAAAPAITPIPALNPPIPPQIAALNPPLPEEPTL 156
>AE014296-1713|AAF50220.2| 1473|Drosophila melanogaster CG16711-PA,
isoform A protein.
Length = 1473
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -1
Query: 473 VSSGKQTSPIAVVPAPAYIILLI---NPPLSPNMKPVRPPIATAPYL 342
+ + + S AVVPA A I I NPP+ P + + PP+ P L
Sbjct: 110 IKTEPKCSSEAVVPAAAPAITPIPALNPPIPPQIAALNPPLPEEPTL 156
>AE014296-1380|AAF50480.2| 883|Drosophila melanogaster CG13676-PA
protein.
Length = 883
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 40 PINEESNGPAKPPPMRVSELPLYETPHADYAEY-LEAKAHEQKTSYLKSALLPPVRALRE 216
P++EE + PA+P P+R + PL A+ E + +E+ + + +A P+R R
Sbjct: 506 PVDEEYDEPAEPEPLRKRKRPLAPRSRVPAADVDFEDEEYEESPAPVSTA--APLRNQRL 563
Query: 217 QVQT 228
+ +T
Sbjct: 564 RAKT 567
>AE014296-66|AAF47366.1| 926|Drosophila melanogaster CG7008-PA
protein.
Length = 926
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +1
Query: 37 APINEESNGPAKPPPMRVSELPLYETPHA-DYAEYLEAKAHEQKTSYLKSALLPP 198
A + + K PP + PLYE PH D E+L K +K + PP
Sbjct: 386 AVVGTDGEEIVKAPPRGKNYRPLYEIPHMFDAREFLRKKLINKKVQCNLDYISPP 440
>L05080-1|AAA28420.1| 873|Drosophila melanogaster calphotin
protein.
Length = 873
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 470 SSGKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAPYLTS 336
+S T P+AV P + + PP++ PV P AP + +
Sbjct: 101 ASPVSTPPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIAT 145
>AY069617-1|AAL39762.1| 787|Drosophila melanogaster LD38414p
protein.
Length = 787
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 170 VTLNQHYYLQYVL*ENKCKHL*IRQISSNTPFRITTTNSKISQNGSLS 313
V + + +LQ KCK+ ++ + N+ RITTTN+ ++ ++S
Sbjct: 24 VVIAVYGFLQVASGLAKCKNDKMQSCNKNSSSRITTTNNNVTTTSNIS 71
>AY058315-1|AAL13544.1| 864|Drosophila melanogaster GH08002p
protein.
Length = 864
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 470 SSGKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAPYLTS 336
+S T P+AV P + + PP++ PV P AP + +
Sbjct: 94 ASPVSTPPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIAT 138
>AE014298-261|AAF45669.2| 787|Drosophila melanogaster CG14801-PB,
isoform B protein.
Length = 787
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 170 VTLNQHYYLQYVL*ENKCKHL*IRQISSNTPFRITTTNSKISQNGSLS 313
V + + +LQ KCK+ ++ + N+ RITTTN+ ++ ++S
Sbjct: 24 VVIAVYGFLQVASGLAKCKNDKMQSCNKNSSSRITTTNNNVTTTSNIS 71
>AE014297-1457|AAF54754.1| 864|Drosophila melanogaster CG4795-PB,
isoform B protein.
Length = 864
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 470 SSGKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAPYLTS 336
+S T P+AV P + + PP++ PV P AP + +
Sbjct: 94 ASPVSTPPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIAT 138
>AE014297-1456|AAF54755.1| 842|Drosophila melanogaster CG4795-PA,
isoform A protein.
Length = 842
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 470 SSGKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAPYLTS 336
+S T P+AV P + + PP++ PV P AP + +
Sbjct: 94 ASPVSTPPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIAT 138
>AY050239-1|AAK84938.1| 440|Drosophila melanogaster SD02309p
protein.
Length = 440
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 37 APINEESNGPAKPPPMRVSELPL-YETPH 120
+P E+ +PPP V +PL YE PH
Sbjct: 214 SPAEEKEQKQEEPPPPAVDPMPLVYEKPH 242
>AE014298-757|AAN09145.1| 440|Drosophila melanogaster CG3208-PB,
isoform B protein.
Length = 440
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 37 APINEESNGPAKPPPMRVSELPL-YETPH 120
+P E+ +PPP V +PL YE PH
Sbjct: 214 SPAEEKEQKQEEPPPPAVDPMPLVYEKPH 242
>AE014298-756|AAF46047.1| 494|Drosophila melanogaster CG3208-PA,
isoform A protein.
Length = 494
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 37 APINEESNGPAKPPPMRVSELPL-YETPH 120
+P E+ +PPP V +PL YE PH
Sbjct: 214 SPAEEKEQKQEEPPPPAVDPMPLVYEKPH 242
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.314 0.130 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,493,943
Number of Sequences: 53049
Number of extensions: 533115
Number of successful extensions: 1784
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1777
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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