Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    30   0.87 
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    30   0.87 
AF024499-6|AAB70354.1|  560|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z81048-4|CAB02844.1|  219|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z83234-4|CAB70168.1|  367|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.        27   6.2  
AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin con...    27   6.2  
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    27   8.1  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    27   8.1  
AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase pr...    27   8.1  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +1

Query: 1    RPNSARGVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSY 174
            RP +   V++   P+N+E++ P  P         +YE+  A     L+++A  Q+  Y
Sbjct: 4543 RPETPETVLEEEKPLNQETSPPTSPTSPASKAPSIYESIGAPQMVQLQSEADFQQGQY 4600


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +1

Query: 1    RPNSARGVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSY 174
            RP +   V++   P+N+E++ P  P         +YE+  A     L+++A  Q+  Y
Sbjct: 4535 RPETPETVLEEEKPLNQETSPPTSPTSPASKAPSIYESIGAPQMVQLQSEADFQQGQY 4592


>AF024499-6|AAB70354.1|  560|Caenorhabditis elegans Hypothetical
           protein F42G2.2 protein.
          Length = 560

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
 Frame = +1

Query: 160 QKTSYLKSALL--PPVRALREQ-VQTFVDQTDFIKHSIQDNYHEFQDKSE-----WIFKY 315
           Q   YLK ALL  P  R  + Q V + +++T F     +  +   +D S      W F Y
Sbjct: 472 QDVVYLKDALLLSPTFRQFKAQFVNSDINETIFDDAFFRYPFRRIEDPSSGLPNIWFFPY 531

Query: 316 LREEENKEVRY 348
              EE+ ++RY
Sbjct: 532 TDVEEDLQIRY 542


>Z81048-4|CAB02844.1|  219|Caenorhabditis elegans Hypothetical
           protein C41G7.6 protein.
          Length = 219

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 470 SSGKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 348
           S+ K T+P A  PAPA       PP +P+  PV P  A AP
Sbjct: 34  SASKMTAPTA--PAPA-------PPAAPDAPPVAPDAAAAP 65


>Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical
           protein F36D1.3 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 384 YEACETTHCNSSISYFFIFFLAQILKDPF*LILEFVVVIL--NGVFDEIC 241
           ++A +TT  +S   + F+ FL   + + F +I +F+VV +   G+   IC
Sbjct: 48  FDANQTTMASSIQKHLFMAFLFMQIANFFYIITDFIVVRIPATGILTSIC 97


>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical protein
            T11G6.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 416  ILLINPPLSPNMKPVRPPIATAPYLTSLFSSSRKY 312
            +++++PP  P+ K ++PP+A  P +++L      Y
Sbjct: 1134 VIILSPPPHPSQKKIQPPVA-PPGISNLNRPGNNY 1167


>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
            protein T11G6.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 416  ILLINPPLSPNMKPVRPPIATAPYLTSLFSSSRKY 312
            +++++PP  P+ K ++PP+A  P +++L      Y
Sbjct: 1134 VIILSPPPHPSQKKIQPPVA-PPGISNLNRPGNNY 1167


>Z83234-4|CAB70168.1|  367|Caenorhabditis elegans Hypothetical
           protein K09E4.1 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 43  INEESNGPAKPPPMRVSELPLYETPHADY 129
           + +E+ GPA PPP    +  L+E  + +Y
Sbjct: 10  LEQEAIGPALPPPSAAQKSELFEEHNVEY 38


>Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical
           protein F43A11.6 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = -3

Query: 309 KDPF*LILEFVVVILNGVFDEIC---LIYKCLHLFS*STYWR**C*FKV---TCLLLMGF 148
           KDP  L+   +++I+NG+F  +C   ++Y  +++    T +   C F+    T +LL GF
Sbjct: 15  KDPLNLLAS-IIMIVNGIFGSVCNLSIVYIFMYVPKEKTSFNLICVFRSLGNTIILLWGF 73


>U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.
          Length = 192

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/96 (19%), Positives = 40/96 (41%)
 Frame = +1

Query: 19  GVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPP 198
           G  K +    EE   P KPP ++      +   +AD +  L+   +    +Y  +A+L  
Sbjct: 51  GTFKLSLEFTEEY--PNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTS 108

Query: 199 VRALREQVQTFVDQTDFIKHSIQDNYHEFQDKSEWI 306
           +++L ++               Q+N  E++ + + I
Sbjct: 109 IQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQI 144


>AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein1 protein.
          Length = 192

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/96 (19%), Positives = 40/96 (41%)
 Frame = +1

Query: 19  GVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPP 198
           G  K +    EE   P KPP ++      +   +AD +  L+   +    +Y  +A+L  
Sbjct: 51  GTFKLSLEFTEEY--PNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTS 108

Query: 199 VRALREQVQTFVDQTDFIKHSIQDNYHEFQDKSEWI 306
           +++L ++               Q+N  E++ + + I
Sbjct: 109 IQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQI 144


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 345 SYFFIFFLAQILKDPF*LILEFVVVILNGV 256
           S+F IF++  +L+  F +IL F++ ILN +
Sbjct: 105 SFFIIFYILHVLQQTFHVIL-FLLAILNSL 133


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
            protein C52B9.8 protein.
          Length = 1336

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 46   NEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQVQ 225
            NE++   AKP  +   E+P      AD  +Y+E    E +  YL+  ++P  R  R +V 
Sbjct: 896  NEQAQ-KAKPRLVGEDEIPRDILRAADETDYIEKAKEEGRVPYLE--VMPGSRRTRREVD 952

Query: 226  TFVD 237
               D
Sbjct: 953  YSAD 956


>AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase
           protein 1 protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 43  INEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALLPPVRALREQ 219
           INE+    A+ PP  +S +PL  + + D  + + A   E+K   L +   P    + E+
Sbjct: 539 INEDRANSAREPPSSMSRVPLRRS-YRDAGQAMSADKKEKKVERLFAQSKPTDEKVPEE 596


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 455 TSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 348
           +S + + PAP+ +I  + PP  P   P +PP + AP
Sbjct: 250 SSTVPLPPAPSSLIQNLPPPPQPAFLP-QPPTSYAP 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,459
Number of Sequences: 27780
Number of extensions: 256873
Number of successful extensions: 675
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)