Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44680.1 68418.m05474 methyladenine glycosylase family protei...    35   0.038
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si...    30   1.1  
At5g10310.1 68418.m01196 expressed protein                             29   1.4  
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    29   2.5  
At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3...    28   3.3  
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3...    28   3.3  
At2g40745.1 68415.m05027 expressed protein                             28   3.3  
At4g19470.1 68417.m02864 disease resistance protein-related simi...    28   4.4  
At4g11050.1 68417.m01796 endo-1,4-beta-glucanase, putative / cel...    28   4.4  
At5g19810.1 68418.m02354 proline-rich extensin-like family prote...    27   5.8  
At4g04220.1 68417.m00598 disease resistance family protein conta...    27   5.8  
At5g39530.1 68418.m04786 expressed protein hypothetical protein,...    27   7.7  
At3g29185.2 68416.m03659 expressed protein                             27   7.7  
At3g29185.1 68416.m03658 expressed protein                             27   7.7  

>At5g44680.1 68418.m05474 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 353

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -1

Query: 470 SSGKQTSPIAV-VPAPAYIILLINPPLSPNMKPVRPPIATAPYLTSLFSSSRK 315
           S  K  +PIA  +P+P  I L I+PPLSPN K +R P  +   L  L SSS K
Sbjct: 42  SPPKPLNPIASKIPSPRPISL-ISPPLSPNTKSLRKPAGSCKEL--LRSSSTK 91


>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
           similar to ubiquitin-conjugating enzyme (GI:3319990)
           [Mus musculus]; similar to Baculoviral IAP
           repeat-containing protein 6 (Ubiquitin-conjugating
           BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
           sapiens];
          Length = 609

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 163 KTSYLKSALLPPVRALREQVQTFVDQTDFIKHSIQDNYHEFQD 291
           ++S L ++LL P   + E  + + +Q DF   +  DNY  +QD
Sbjct: 87  ESSPLSNSLLDPESLIYEDDENYSEQYDFEMEAEPDNYSMYQD 129


>At5g10310.1 68418.m01196 expressed protein 
          Length = 122

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 428 PAYIILLINPPLSPNMKPVRPPIA 357
           P  +ILLI P +S  ++P++PPI+
Sbjct: 13  PLILILLITPQVSSFLQPIQPPIS 36


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +2

Query: 218 KCKHL*IRQISSNTP-FRITTTNSKISQNGSLSICARKKIKK*DMELLQWVVSQASYLDS 394
           KC H  I     N   F I    S  S+ GSL+   R   K  D +L+ W    A+Y  S
Sbjct: 59  KCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQS 118

Query: 395 G---VDLLGE*YMLVRVPQQ 445
               V+ + + ++L R+ +Q
Sbjct: 119 SECVVENIQQAFLLFRILRQ 138


>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1219

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -3

Query: 444  CCGTRTSIYYSPNKSTPESKYEACETTHCNSSISY 340
            CC T+ S  +         K E CE   C  S+ Y
Sbjct: 1120 CCYTKASFEFYVTDDETRKKIETCEVIKCGMSLMY 1154


>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
           (GLUR2) identical to putative glutamate receptor
           like-protein GLUR2 [Arabidopsis thaliana]
           gi|13160471|gb|AAK13248; plant glutamate receptor
           family, PMID:11379626
          Length = 912

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 119 CGVSYNGSSDTRMGGGFAGPFDSSL 45
           CG +  G   TR G GFA P DS L
Sbjct: 755 CGFAIRGQEFTRSGWGFAFPRDSPL 779


>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
           (GLUR2) identical to putative glutamate receptor
           like-protein GLUR2 [Arabidopsis thaliana]
           gi|13160471|gb|AAK13248; plant glutamate receptor
           family, PMID:11379626
          Length = 912

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 119 CGVSYNGSSDTRMGGGFAGPFDSSL 45
           CG +  G   TR G GFA P DS L
Sbjct: 755 CGFAIRGQEFTRSGWGFAFPRDSPL 779


>At2g40745.1 68415.m05027 expressed protein
          Length = 137

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 9  FGTRGYQSGRPYQRGIK-WSREASTH 83
          FGT G  +GRPYQ  ++ W+ E   H
Sbjct: 20 FGTIGVTNGRPYQYKVEAWTNENEKH 45


>At4g19470.1 68417.m02864 disease resistance protein-related similar
           to disease resistance protein RPS4-Ler
           (GI:5823587)[Arabidopsis thaliana]; similar to TMV
           resistance protein N, Nicotiana glutinosa, PIR2:A54810;
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 417

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = -3

Query: 450 SHCCGTRTSIYYSPNKSTPESKYEACETTHCNSSISY 340
           + CC T  S  +       + K + CE   C  S+ Y
Sbjct: 295 NRCCNTTASFKFFVTDGRAKRKLDCCEVVKCGMSLLY 331


>At4g11050.1 68417.m01796 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to endo-beta-1,4-glucanase
           GI:4972236 from [Fragaria x ananassa]
          Length = 626

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 440 VVPAPAYIILLINPPLSPNMKPVRPPIATAP 348
           V P P+ +I  I P   P  KP +PP A++P
Sbjct: 503 VSPTPSPVI--IKPAPVPQRKPTKPPAASSP 531


>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 249

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 476 LVSSGKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 348
           L++S  + +P+  +  P   + + +PP   N+ P  PP+  +P
Sbjct: 29  LLTSAPEPAPLVDLSPPPPPVNISSPPPPVNLSPPPPPVNLSP 71


>At4g04220.1 68417.m00598 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-2A [Lycopersicon
           pimpinellifolium] gi|3894389|gb|AAC78594
          Length = 811

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 211 REQVQTFVDQTDFIKHSIQDNYHEFQDKSEW 303
           ++Q Q+ ++  + + H+I+DNY  F++   W
Sbjct: 26  QDQRQSLLEFKNLLIHNIKDNYTAFEELGTW 56


>At5g39530.1 68418.m04786 expressed protein hypothetical protein,
           Synechocystis sp., PIR:S77152
          Length = 239

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 16  RGVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKA 153
           R ++++       S  PA       +++PL E+P A + EYLE K+
Sbjct: 28  RSLLRSRVMCQVSSVKPATYSSRLSTDIPLNESPQALFDEYLEDKS 73


>At3g29185.2 68416.m03659 expressed protein
          Length = 411

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 398 PLSPNMKPVRPPIATAPYLTS 336
           PLS ++KP+R PI  + Y TS
Sbjct: 15  PLSKSLKPIRSPILRSDYGTS 35


>At3g29185.1 68416.m03658 expressed protein
          Length = 433

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 398 PLSPNMKPVRPPIATAPYLTS 336
           PLS ++KP+R PI  + Y TS
Sbjct: 15  PLSKSLKPIRSPILRSDYGTS 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,694,153
Number of Sequences: 28952
Number of extensions: 243991
Number of successful extensions: 722
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)