Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    54   1e-08
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    38   0.001
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    36   0.003
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    36   0.005
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    34   0.015
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    33   0.026
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    30   0.18 
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    29   0.56 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   1.7  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    26   3.9  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   5.2  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   5.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   5.2  
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    25   6.8  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   6.8  

>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
 Frame = +1

Query: 34  PFILGFECAGEIEQVGENV-TNFKVGDQVVALPEYRAWAELVSVPAQYVYALPEGMSALD 210
           P+I G E AG +  VG+ V  +FKVGD+VV L  + A+A+  +VP   V  + E +    
Sbjct: 58  PYIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKI 117

Query: 211 AVAITTNYVVAYLLLFEMANLTPGKSLLVHS 303
           A A     + AY L+ E   +  G +++VH+
Sbjct: 118 ASAALLQGLTAYTLIEEAYPVKTGDTVVVHA 148


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +1

Query: 34  PFILGFECAGEIEQVGENVTNFKVGDQVVAL 126
           P ILG E AG +E VG  VT  +VGD V+AL
Sbjct: 67  PVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 34  PFILGFECAGEIEQVGENVTNFKVGDQVVAL 126
           P +LG E AG +E +GE V N + GD V+ L
Sbjct: 64  PIVLGHEGAGIVESIGEGVINVRPGDHVILL 94


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 28  KTPFILGFECAGEIEQVGENVTNFKVGDQVVALP 129
           K P ILG E AG + +VG+ V++ K GD V   P
Sbjct: 60  KKPMILGHESAGVVVEVGKGVSSLKPGDPVAVEP 93


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 22  PPKTPFILGFECAGEIEQVGENVTNFKVGDQVV 120
           P + P + G + AG IE+VGE+V  F+ GD VV
Sbjct: 57  PLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVV 89


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 33.1 bits (72), Expect = 0.026
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 65  KSSKLAKMSPILRWATKWWLSPSTALGPSWCLYRPSTCTRCPKECLPW 208
           +SS L K+ P+LR+  ++WL+        +  Y PST +   K   PW
Sbjct: 154 RSSHLLKVRPLLRFLIEFWLNGVVGTPEDFVSYLPSTDSNDKKFRKPW 201


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 40  ILGFECAGEIEQVGENVTNFKVGDQVV 120
           ILG E  G + + G+ V N ++GD+VV
Sbjct: 94  ILGHESCGIVAEKGDEVNNLEIGDRVV 120


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
 Frame = +1

Query: 28  KTPFILGFECAGEIEQVGENVTNFKVGDQVVALPEY-RAWAELVSVPAQYV------YAL 186
           K P I G++ AG +  VG  V  F    +V     + RA  +  S     V      + L
Sbjct: 75  KLPNIPGYDFAGRVLAVGSEVKEFSATQRVWGCQSFPRAGRQGGSCATHIVTGDKDVWHL 134

Query: 187 PEGMSALDAVAITTNYVVAYLLLFEMANLTPGKSLLV 297
           P+G+S  +        + A+ +L     + PG  L++
Sbjct: 135 PDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLVI 171


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 174 VLGRYRHQLGPSAVLGESHHLVAHLKIGDIFAN 76
           +LGRY   L     L   +H + H+ I  I+AN
Sbjct: 425 ILGRYPFLLRAYPELSNLYHKLLHISISSIYAN 457


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 194 PSGS-AYTYWAGTDT--SSAQARYSGRATTWSPTLKLVTFSPTCS 69
           P G  A+ +W+ + +  +S+ A YSG   T+SPT       P+ S
Sbjct: 388 PRGQKAWEWWSASYSLFTSSNATYSGEQKTYSPTTLSTNAPPSPS 432


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 361 TVFGVCSKSKHEALKTNNNNIDHLLER 441
           TV  + SKS+HE  +  N+ + +LL R
Sbjct: 543 TVESILSKSRHEEYRIANHIVAYLLSR 569


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 445 SDYTSEVRKVTPDGVNIVLDC 507
           +DY S  ++++P  +N+ LDC
Sbjct: 327 NDYESISKEISPIAINLTLDC 347


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 382  KSKHEALKTNNNNIDHL 432
            K+  EAL++  NNIDHL
Sbjct: 1038 KTLREALQSKTNNIDHL 1054


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 385  SKHEALKTNNNNIDHLLERGSDYTSEVRKVTPDG 486
            S+H  L   NN+ +H+LER     +++     DG
Sbjct: 1381 SQHRRLNLVNNHKEHVLERAMSENNKMDNEAMDG 1414


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 184 LPEGMSALDAVAITTNYVVAYLLLFEMANLTPGKSLLVH 300
           +P+G SA+D VAI T    +  +     NL   K  +VH
Sbjct: 219 IPKGWSAIDNVAIKTADSASLPIWTSDTNLAAHKRHIVH 257


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 358 VTVFGVCSKSKHEALKTNNNNIDHLLERGSDYTSEV-RKVTPDGVNIV 498
           V + G C K          +N   LL++   YTSEV  K+  +  NIV
Sbjct: 343 VELIGACDKVDDLQYMEQLHNSTDLLKKAFAYTSEVFEKIVEEYKNIV 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,247
Number of Sequences: 5004
Number of extensions: 47140
Number of successful extensions: 138
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)