Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.36 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   7.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 166 PVQTPARPKRGTRGEPPLGRPP 101
           P Q+P  P+RG+   P  G PP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPP 48


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 453  VVAAPLEQVVDVIVVCLQR 397
            VVAA L  +V VIV+C+ R
Sbjct: 1591 VVAAILVIIVAVIVICVLR 1609


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 427 GRCYCCLSSAP 395
           G CY C+S AP
Sbjct: 321 GDCYYCISGAP 331


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 156 VCTGPVRVRAARRNVCPGCCCHH 224
           VC+ P  V  A++ V    CC H
Sbjct: 586 VCSLPCEVGQAKKYVAGEQCCWH 608


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 209 MLLPSPRTTWW 241
           ML PSP+T W+
Sbjct: 201 MLEPSPKTPWY 211


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 255 EQQIGHHVVR 226
           E+QIGHH+++
Sbjct: 196 ERQIGHHLIQ 205


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 159 CTGPVRVRAARRNVCPGCCCHHHELRGGLS 248
           C+G   +R    + C GC    H+ + G++
Sbjct: 22  CSGYPSIRQGTTSYCLGCGDSCHKCKYGIA 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,183
Number of Sequences: 438
Number of extensions: 3100
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)