Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D06f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    25   0.41 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.7  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 4   KSDSTQW---KTLTAQEKCSQGLLTERQVLA 87
           ++DS  W   K LTA ++CS  LL    VLA
Sbjct: 342 RADSVTWNPHKLLTAPQQCSTLLLRHEGVLA 372


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 423 ANTLFVSQFNGGTRQLDHTEQSASSGPAQPVPE 521
           AN+      NGG    +H  Q    G A  VP+
Sbjct: 6   ANSYMPDMRNGGVVSAEHPHQHQHYGAAVQVPQ 38


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 423 ANTLFVSQFNGGTRQLDHTEQSASSGPAQPVPE 521
           AN+      NGG    +H  Q    G A  VP+
Sbjct: 6   ANSYMPDMRNGGVVSAEHPHQHQHYGAAVQVPQ 38


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 279 EEMIRKRNHIASDAAALRYCVI 214
           E +I K+N  A  A  LR C++
Sbjct: 47  ECVINKKNRTACKACRLRKCLL 68


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 116 NVYKFPRLLIWTHWISLRSY 175
           N  K P ++IW+  +S R Y
Sbjct: 445 NGVKIPLVIIWSSNLSKRPY 464


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,295
Number of Sequences: 336
Number of extensions: 2779
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)