Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0001 - 11373469-11373862,11374072-11374264,11374414-113744...    32   0.24 
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551...    29   1.7  
02_04_0081 + 19541691-19541798,19541865-19542062,19542133-195421...    29   2.3  
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391...    27   9.1  
03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184     27   9.1  

>09_03_0001 -
           11373469-11373862,11374072-11374264,11374414-11374482,
           11374858-11374984,11375223-11375485,11375697-11375785,
           11375832-11375909,11376070-11376141,11376234-11376372,
           11378857-11379323,11380781-11381345,11382553-11382622
          Length = 841

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 280 LEWRDTDGQEYKVDLENGELKSKRRCPFSASPTNQKNIRRYCPEKLL 420
           + W+DT  +EY V L   + +S +   F A P   + +  Y P  LL
Sbjct: 269 ISWQDTTAKEYVVYLHFADFQSSKLREFDAYPDANQVVYNYTPHYLL 315


>12_02_1088 -
           25954506-25954652,25954769-25954918,25955011-25955116,
           25955247-25955569,25955656-25955790,25956310-25956444,
           25956445-25956525,25956619-25956807,25956935-25957127,
           25957244-25957350,25957457-25957531,25957619-25957774,
           25957968-25958051,25958152-25958265,25958345-25958440,
           25958543-25958633,25958721-25958836,25958934-25959093,
           25960390-25960634
          Length = 900

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 441 IRREYLLQQLLWTVSA-YIFLVCW 373
           + R+  L Q+LWT+   Y+FL CW
Sbjct: 561 LSRDMYLLQVLWTIRVNYLFLCCW 584


>02_04_0081 +
           19541691-19541798,19541865-19542062,19542133-19542191,
           19542274-19542994,19543382-19543723
          Length = 475

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +1

Query: 43  EKCSQGLLTERQVLAAVSYVIYGQECIQVSATANLDTLDITKILLNKRGSVLAVACIYHA 222
           ++ ++ L   R+ L  +  ++ G E  +     ++  L+    LL  RGS+       H 
Sbjct: 216 DRLTRDLAEVRKDLQKMRELVAGNERQRQGLERHMSELENN--LLEIRGSLRVTYTGLHQ 273

Query: 223 VAKRCGVACDVVAFPNHFFL 282
           +A  CGV   + A PN F L
Sbjct: 274 LAGECGVKTTISANPNEFSL 293


>11_08_0035 -
           27838495-27838655,27838750-27838897,27838987-27839192,
           27839291-27839972,27840074-27840247,27840963-27841181,
           27841281-27841400,27841540-27841680,27841762-27841801,
           27841969-27842129,27842506-27842589,27842659-27842721,
           27842808-27842885,27842980-27842984,27843228-27843313,
           27843354-27843544,27844089-27844166,27844255-27844365,
           27844757-27844927,27845026-27845198,27845748-27845928
          Length = 1090

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 412 KLLQQILSSYLNSMGVHDNWTTQNSLR-LVDLLNPSQ 519
           +L Q I SS + S G H  W T N+LR L  ++ P Q
Sbjct: 139 QLKQVIHSSNIISPGQHPEWNTINALRVLQSVVRPFQ 175


>03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184
          Length = 259

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 154 LDITKILLNKRGSVLAVACIYHAVAKRCGVACDVVAFPNHFFL 282
           L++   +++ RGS+       H +A  CGV   + A P+ F L
Sbjct: 20  LELEGHMIDIRGSLRTSFTSLHQLAGECGVTTTIPAHPDEFSL 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,032,419
Number of Sequences: 37544
Number of extensions: 308322
Number of successful extensions: 965
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)