Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_59587| Best HMM Match : HhH-GPD (HMM E-Value=1e-09)                 28   4.1  
SB_41955| Best HMM Match : RVT_1 (HMM E-Value=5.3e-15)                 28   5.4  
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)                      27   7.1  
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     27   9.4  

>SB_42501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -2

Query: 460 VPPLN*DTKRVFAATTSLDSICVYFSGLLDSLKTGSASSTLTPHFRGPLYIL 305
           VP L   T  V ++ T L+    YF G  D        S+  P  R P Y+L
Sbjct: 40  VPELGITTSNVISSGTRLEGGTAYFIGQFDGRIVDLPISSPAPVIRRPFYLL 91


>SB_59587| Best HMM Match : HhH-GPD (HMM E-Value=1e-09)
          Length = 300

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +2

Query: 164 LRSY*INAGAF*PWRASITQ*RSAAASLAMWLRFRIISSWSGATLMDKNIKWTSKMGS*S 343
           LR Y IN  +  PWRA  T+  +   + A+W+   ++     AT++D   +W     S  
Sbjct: 39  LRWYDINKRSL-PWRAYATEQDANIRAYAVWVSEIMLQQTQVATVVDYYNRWMKNWPSLE 97

Query: 344 RRGAARFQRV 373
               A  + V
Sbjct: 98  ALARASLEEV 107


>SB_41955| Best HMM Match : RVT_1 (HMM E-Value=5.3e-15)
          Length = 962

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 310 ILVHQCRATPGRNDSETQPHRKRRRSASLLRDRCTPR---LKRSRVYLVRS 167
           I VH    T G+ +++ +      R+ +   DRC  R   L +S++ L RS
Sbjct: 759 ITVHDDMVTYGKGETDNEAREDHDRNLNAFLDRCRERGIKLNKSKIQLRRS 809


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 512 GLSRSTRRRLFCVVQLSCTPIELRYEESICCNNFSGQYLRI 390
           GL     R  F  V+L CT    RY  S+C  +F  Q +R+
Sbjct: 207 GLELEGIRIFFFTVRLRCTVCACRYVHSVCV-SFRSQCVRV 246


>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
          Length = 1119

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 268 NHFFLEWRDTDGQEYKVDLENGELKSKRRCPFSASPTNQKNIRRY 402
           N   L++R+++  E           + +RCPFS     Q+ I+ Y
Sbjct: 258 NRLSLDYRESNSSERLPKPPTDVSTTLKRCPFSIQSNKQRRIKAY 302


>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 277 RNDSETQPHRKRRRSASLLRDRCTPRLKRSRVYLVRS**YPMC 149
           + + ET P RKRR S  +     +     +R+Y  RS   P+C
Sbjct: 668 QGNMETSPDRKRRASEDIDDSESSWTDTETRIYAARSNLIPVC 710


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,281,677
Number of Sequences: 59808
Number of extensions: 362674
Number of successful extensions: 1143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)