Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309D06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p... 33 0.16
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 30 1.2
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p... 28 3.5
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z31590-9|CAA83467.2| 581|Caenorhabditis elegans Hypothetical pr... 28 4.7
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr... 28 4.7
AL032660-3|CAA21753.2| 581|Caenorhabditis elegans Hypothetical ... 28 4.7
L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z82270-3|CAB63205.1| 667|Caenorhabditis elegans Hypothetical pr... 27 8.1
U58756-10|AAC48087.1| 310|Caenorhabditis elegans Hypothetical p... 27 8.1
AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
protein F02E9.4b protein.
Length = 1507
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = +1
Query: 238 GVACD-----VVAFPNHFFLEWRDTDGQEYKVDLENGEL 339
G CD +V F +EW +GQ+ ++DL+NGE+
Sbjct: 1049 GTKCDRDRTKIVLFSYRILMEWLCQEGQQVQIDLDNGEI 1087
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
F26A3.3 protein.
Length = 1632
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Frame = +1
Query: 247 CDVVAFPNHF------FLEWRDTDGQEYKVDLENGELKSKRRCPFSASPTNQK-NIRRYC 405
CDVV FP H + D DG EY + + L K P+ + QK + +
Sbjct: 953 CDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPYDFTSEKQKASFKEDE 1012
Query: 406 PEKLLQQILSSY--LNSMGVHDNWTTQNS 486
+ L+++ Y L+S+G N NS
Sbjct: 1013 IDDLMREFYVKYLKLDSVGQISNSHLHNS 1041
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Frame = +1
Query: 247 CDVVAFPNHF------FLEWRDTDGQEYKVDLENGELKSKRRCPFSASPTNQK-NIRRYC 405
CDVV FP H + D DG EY + + L K P+ + QK + +
Sbjct: 953 CDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPYDFTSEKQKASFKEDE 1012
Query: 406 PEKLLQQILSSY--LNSMGVHDNWTTQNS 486
+ L+++ Y L+S+G N NS
Sbjct: 1013 IDDLMREFYVKYLKLDSVGQISNSHLHNS 1041
>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical protein
F02E9.4a protein.
Length = 1505
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 280 LEWRDTDGQEYKVDLENGEL 339
+EW +GQ+ ++DL+NGE+
Sbjct: 1066 MEWLCQEGQQVQIDLDNGEI 1085
>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
protein Y49E10.11b protein.
Length = 1089
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 336 VKVEEALPVFSESNKPEKYTQILSREVVAANTLFVSQFNG 455
+K+++AL + S PEK +Q S + V++FNG
Sbjct: 173 LKIKQALDITSTMTSPEKLSQFESEITCEPPSRHVNEFNG 212
>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
protein Y49E10.11a protein.
Length = 1139
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 336 VKVEEALPVFSESNKPEKYTQILSREVVAANTLFVSQFNG 455
+K+++AL + S PEK +Q S + V++FNG
Sbjct: 173 LKIKQALDITSTMTSPEKLSQFESEITCEPPSRHVNEFNG 212
>Z31590-9|CAA83467.2| 581|Caenorhabditis elegans Hypothetical
protein R01H10.1 protein.
Length = 581
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +1
Query: 358 PFSASPTNQKNIRRYCPEKLLQQILSSYLNSMGVHDNWTTQNSLRLV 498
PF SP N+K ++R P ++ I G+ + + +++R++
Sbjct: 136 PFPGSPANEKFLKRADPSHVVTTIRGKKYQDKGLKGSTKSDDTIRII 182
>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
C13F10.4 protein.
Length = 2076
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 49 CSQGLLTERQVLAAVSYVIYGQECIQVSATANLDTLDITKILLNKRGSVLAVACIYHAV 225
C L + LA +S + + A D L+ K +N+ G VLA+ C++ V
Sbjct: 885 CPMTRLVGAEALARLSQAVNSPPFVASIAQYCFDKLNSCKDEINRSGHVLALGCLHRHV 943
>AL032660-3|CAA21753.2| 581|Caenorhabditis elegans Hypothetical
protein R01H10.1 protein.
Length = 581
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +1
Query: 358 PFSASPTNQKNIRRYCPEKLLQQILSSYLNSMGVHDNWTTQNSLRLV 498
PF SP N+K ++R P ++ I G+ + + +++R++
Sbjct: 136 PFPGSPANEKFLKRADPSHVVTTIRGKKYQDKGLKGSTKSDDTIRII 182
>L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical
protein C50C3.8 protein.
Length = 410
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 44 KNVRKVSLLSDKYWLLCLTSSMDRNVYKFPRLLIWTH-WISLR 169
KNV ++++ SD Y L S++ R + R++I T WISL+
Sbjct: 322 KNVTQIAMFSDTYTADYLKSAVIRFLTTHHRVVIKTQDWISLK 364
>Z82270-3|CAB63205.1| 667|Caenorhabditis elegans Hypothetical
protein F53H2.3 protein.
Length = 667
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 375 NKPEKYTQILSREVVAANTLFVSQ-FNGGTRQLDHTEQSASSGPAQPVPE 521
N P KY Q+L+ + AA F+ Q F +Q Q+ A P P+
Sbjct: 331 NGPSKYNQLLAAQAAAAQAAFLQQAFQLQAQQ--QASQAPQGAHAPPPPQ 378
>U58756-10|AAC48087.1| 310|Caenorhabditis elegans Hypothetical
protein F58F9.1 protein.
Length = 310
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 103 IYGQECIQVSATANLDTLDITKILLN 180
IY Q+ IQV+A ++D ++ ++LLN
Sbjct: 37 IYNQDEIQVAANISIDLMNQPRVLLN 62
>AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical
protein C34H4.2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 361 TGSASSTLTPHFRGPLYILVHQCRATP-GRNDSETQPHRKRRRSASLL 221
TG++ S+++P GP + Q TP G S Q K RS S+L
Sbjct: 391 TGTSGSSVSPPASGPTTSMPAQASTTPSGTMGSTLQTTTKFSRSPSIL 438
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,700,364
Number of Sequences: 27780
Number of extensions: 265864
Number of successful extensions: 933
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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