Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23210.1 68416.m02926 basic helix-loop-helix (bHLH) family pr...    33   0.12 
At5g07680.2 68418.m00880 no apical meristem (NAM) family protein...    31   0.36 
At5g07680.1 68418.m00879 no apical meristem (NAM) family protein...    31   0.36 
At3g01860.2 68416.m00131 expressed protein                             30   0.82 
At3g01860.1 68416.m00130 expressed protein                             30   0.82 
At3g20210.1 68416.m02561 vacuolar processing enzyme, putative / ...    29   2.5  
At1g15180.1 68414.m01815 MATE efflux family protein contains Pfa...    28   4.4  
At1g15170.1 68414.m01814 MATE efflux family protein similar to r...    28   4.4  
At1g15160.1 68414.m01812 MATE efflux family protein Strong simil...    27   7.7  
At1g15150.1 68414.m01811 MATE efflux family protein similar to r...    27   7.7  

>At3g23210.1 68416.m02926 basic helix-loop-helix (bHLH) family
           protein similar to hypothetical protein GB:CAB10220 from
           [Arabidopsis thaliana]
          Length = 320

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = -2

Query: 475 WSSCRVPPLN*DTKRVFAATTSLDSICVYF----SGLLDSLKTGSASSTLTPHFRGPLYI 308
           + SC V  +    ++  +   +L+ +C  F    +G++ S   GSA   L   F G L  
Sbjct: 41  FGSCGVNLMQPQQEQFDSFNGNLEQVCSSFRGGNNGVVYSSSIGSAQLDLAASFSGVLQQ 100

Query: 307 LVHQCRATPGRNDSETQPHRKRRR 236
             HQ     G+ND    PH ++++
Sbjct: 101 ETHQVCGFRGQNDDSAVPHLQQQQ 124


>At5g07680.2 68418.m00880 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 315

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 345 EEALPVFSESNKPEKY-TQILSREVVAANTLFVSQFNGGTRQLDHTE-QSASSGPAQPVP 518
           +  L    E+N+ + + T  +S+E   +NT   S F  G ++ DH E  S SSGP    P
Sbjct: 252 QSVLQAMMENNRRQNFKTLSISQETGVSNTDNSSVFEFGRKRFDHQEVPSPSSGPVDLEP 311


>At5g07680.1 68418.m00879 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 329

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 345 EEALPVFSESNKPEKY-TQILSREVVAANTLFVSQFNGGTRQLDHTE-QSASSGPAQPVP 518
           +  L    E+N+ + + T  +S+E   +NT   S F  G ++ DH E  S SSGP    P
Sbjct: 266 QSVLQAMMENNRRQNFKTLSISQETGVSNTDNSSVFEFGRKRFDHQEVPSPSSGPVDLEP 325


>At3g01860.2 68416.m00131 expressed protein
          Length = 159

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = -2

Query: 289 ATPGRNDSETQPHRKRRRSASLLRDRCTPRL 197
           ATP  N+ E Q   KR RSA+L   RC PRL
Sbjct: 107 ATPYNNNKERQQKFKRVRSAAL--GRCVPRL 135


>At3g01860.1 68416.m00130 expressed protein
          Length = 223

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = -2

Query: 289 ATPGRNDSETQPHRKRRRSASLLRDRCTPRL 197
           ATP  N+ E Q   KR RSA+L   RC PRL
Sbjct: 171 ATPYNNNKERQQKFKRVRSAAL--GRCVPRL 199


>At3g20210.1 68416.m02561 vacuolar processing enzyme, putative /
           asparaginyl endopeptidase, putative similar to
           asparaginyl endopeptidase (VmPE-1) [Vigna mungo]
           GI:4589396; contains Pfam profile PF01650: Peptidase C13
           family; identical to cDNA vacuolar processing enzyme
           delta preproprotein (At3g20210)  GI:24850432
          Length = 466

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 274 FFLEW-RDTDGQEY-KVDLENGELKSKRRCPFSASPTNQKNIRRYCPEKLLQQILSSYLN 447
           F + W  D+D  +  K  LE      KRR       T+  ++ R+  EK+L+  LSSY+ 
Sbjct: 258 FSISWLEDSDLHDMSKETLEQQYHVVKRRVGSDVPETS--HVCRFGTEKMLKDYLSSYIG 315

Query: 448 SMGVHDNWTTQNS 486
               +DN+T   S
Sbjct: 316 RNPENDNFTFTES 328


>At1g15180.1 68414.m01815 MATE efflux family protein contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 482

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 155 WISLRSY*INAGAF*PWRASITQ*RSAAASLAMWLRFRIISSWSG 289
           W  + +Y IN GAF  W   I      AASLA W+  + +  W G
Sbjct: 407 WQHIGAY-INLGAFYLWGIPI------AASLAFWIHLKGVGLWIG 444


>At1g15170.1 68414.m01814 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 481

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 155 WISLRSY*INAGAF*PWRASITQ*RSAAASLAMWLRFRIISSWSG 289
           W  + +Y IN GAF  W   I      AASLA W+  + +  W G
Sbjct: 406 WQHIGAY-INLGAFYLWGIPI------AASLAFWIHLKGVGLWIG 443


>At1g15160.1 68414.m01812 MATE efflux family protein Strong
           similarity to gi|4734005 F3L12.7 hypothetical protein
           from Arabidopsis thaliana BAC gb|AC007178; similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 487

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 155 WISLRSY*INAGAF*PWRASITQ*RSAAASLAMWLRFRIISSWSG 289
           W  + +Y IN GAF  W   I      AASLA W+  + +  W G
Sbjct: 403 WQHIGAY-INFGAFYLWGIPI------AASLAFWVHLKGVGLWIG 440


>At1g15150.1 68414.m01811 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 487

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 155 WISLRSY*INAGAF*PWRASITQ*RSAAASLAMWLRFRIISSWSG 289
           W  + +Y IN GAF  W   I      AASLA W+  + +  W G
Sbjct: 403 WQHIGAY-INFGAFYLWGIPI------AASLAFWVHLKGVGLWIG 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,942,158
Number of Sequences: 28952
Number of extensions: 243729
Number of successful extensions: 832
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)