Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  29   3.1  
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)                 28   4.1  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         25   6.8  
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)                   25   7.2  
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          27   9.4  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.4  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          27   9.4  

>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 116 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 220
           T     T   P+++ A PE + A PE + A PE++
Sbjct: 33  TAAPDATTAAPDATTAAPEATTAAPEATTAAPEAT 67



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 116 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 220
           T     T   P+++ A P+ + A PE + A PE++
Sbjct: 26  TAAPMETTAAPDATTAAPDATTAAPEATTAAPEAT 60



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 116 TCVSQNTGTCPESSCACPEISCACPETSCACP 211
           T     T   PE++ A PE + A PE + A P
Sbjct: 40  TAAPDATTAAPEATTAAPEATTAAPEATTAAP 71


>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 119 CVSQNTGTCPESSCACPEISCACPETSC 202
           CVS      P  + ACP ++ AC   SC
Sbjct: 80  CVSYRYDRVPYLTSACPNVTSACQRVSC 107


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 119  CVSQNTGTCPESSCACPEISCACPETSCACPESS 220
            C+  N   C + +  C   S  CP+ S  CP+S+
Sbjct: 998  CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSN 1030



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 125  SQNTGTCPESSCACPEISCACPETSCACPESS 220
            S++  TC   S  CP+ S  CP+++    E+S
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETS 1037


>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 128 QNTGTCPESSCACPEISCACPETSCACPESS 220
           +   T PE + A PE +   PE +  CPE +
Sbjct: 84  EGNSTSPEGNSASPEGNSTSPEGNSTCPEGN 114



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 128 QNTGTCPESSCACPEISCACPETSCACPESS 220
           +   T PE + A PE + A PE + A PE +
Sbjct: 133 EGNSTSPEGNSASPEGNSASPEGNSASPEGN 163


>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
          Length = 1421

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 119 CVSQNTGTCPESSCACPEISCACPETSCAC 208
           C   +TG  P ++C C  I    P+T+C C
Sbjct: 892 CCLMDTGL-PHTACQCCLIGTGLPQTACQC 920



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 119  CVSQNTGTCPESSCACPEISCACPETSCAC 208
            C   +TG  P ++C C  I    P T+C C
Sbjct: 962  CRLMDTGL-PHTACQCRLIDTGLPHTACQC 990



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 119  CVSQNTGTCPESSCACPEISCACPETSCAC 208
            C   +TG  P ++C C  I    P T+C C
Sbjct: 1004 CRLMDTGL-PHTACQCRLIDTGLPHTACQC 1032


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 24.6 bits (51), Expect(2) = 6.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 128  QNTGTCPESSCACP 169
            Q+ G C ES C CP
Sbjct: 1524 QHGGVCTESGCMCP 1537



 Score = 21.0 bits (42), Expect(2) = 6.8
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 185  CPETSCACPES 217
            C E+ C CP S
Sbjct: 1529 CTESGCMCPSS 1539


>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
          Length = 1686

 Score = 24.6 bits (51), Expect(2) = 7.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 128  QNTGTCPESSCACP 169
            Q+ G C ES C CP
Sbjct: 1266 QHGGVCTESGCMCP 1279



 Score = 21.0 bits (42), Expect(2) = 7.2
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 185  CPETSCACPES 217
            C E+ C CP S
Sbjct: 1271 CTESGCMCPSS 1281


>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +2

Query: 119 CVSQNTGT--CPESSCACPEISCACPETSCACPESSC 223
           C S  +GT  CP ++    +    C + +C C  +SC
Sbjct: 173 CYSCESGTDVCPLATPCASQFGITCRKLTCFCSRTSC 209


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 149 ESSCACPEISCACPETSCACPESSC 223
           E +CAC      CP+  C  P   C
Sbjct: 69  ERNCACRSAEFKCPDGKCVHPSKFC 93


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 198  LVSGQAQLISGQAQLLSGQVPVFWLT 121
            ++ GQ Q++SG AQ + G   + W++
Sbjct: 1945 IIDGQRQVVSGHAQKIRGAQALVWVS 1970


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 149 ESSCACPEISCACPETSCACPESSC 223
           E +CAC      CP+  C  P   C
Sbjct: 69  ERNCACRSAEFKCPDGKCVHPSKFC 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.143    0.534 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,791,331
Number of Sequences: 59808
Number of extensions: 57161
Number of successful extensions: 319
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)