Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D04f
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   3.5  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   4.6  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   4.6  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   4.6  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   6.1  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   8.0  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.0  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    25   8.0  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 183 KYENDVLFFIYNREYNDALKLGRIVDASGD 94
           +  NDV  + ++++ N+  K+G++VDA G+
Sbjct: 339 RVNNDVEAYQWSQKENEWKKIGQVVDAVGN 368


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +2

Query: 191 WRNHCSLVVSAVLVPNITRS*VLQSVVELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRS 370
           +RNH SL  S    P    S    S   ++ +Y L L  W   YTL++        L+R 
Sbjct: 724 YRNHNSLG-SISQEPYRWESVAESSRCAMNIRYSL-LPYW---YTLMYEASSQGLPLIRP 778

Query: 371 LFFSLPS 391
           LFF  P+
Sbjct: 779 LFFEFPN 785


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 23  KGVTNQEKMSGRPATSPSCPNAIRSPE 103
           K +++   +  RP+T PSCPNA  SP+
Sbjct: 291 KVLSHCSPIDARPST-PSCPNASISPK 316


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 351 FITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGT 229
           F+ ++E N +    H+ K+N+Y  + S    N   RV+ GT
Sbjct: 735 FLRVYEKNTLSEIAHH-KFNEYEMVESIILMNDDKRVVVGT 774


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -3

Query: 276 SSTTDCNTQDRVIFGTNTADTTREQWFLQPTKYENDVLFFIYNREYN 136
           SS   C  ++  I    T +     W LQ   Y NDV F  + R  N
Sbjct: 237 SSVNVCKEENFAILEVATPEDATFLWGLQSESYSNDV-FLKFQRIQN 282


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 320 YTLLFSHKVMNFQLMRSLFFSLPSPYASLSFAGSRVGPSF 439
           Y+L+FSH +++         SL S +    +  S VG SF
Sbjct: 652 YSLIFSHSLLDLTFQYVDIASLLSQFLLCVYDPSNVGHSF 691


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +2

Query: 26  GVTNQEKMSGRPATSPSCPNAIRSPEASTILPSFKASLYSRL*MKNRTSFSYFVGWRNHC 205
           G T+  K +  P+   S  + I+SP +   LP+   S    L + N+   S F   R   
Sbjct: 183 GKTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPT 242

Query: 206 SLVVSAVLVPNITRS 250
           S   + V+V + T S
Sbjct: 243 SSSKTFVIVDHSTPS 257


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 306 NTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTRE 205
           NT+Y Q   L S TD  +Q R+    N   T  E
Sbjct: 204 NTRYEQMALLESQTDTYSQQRMSSIQNIESTITE 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,330
Number of Sequences: 5004
Number of extensions: 34261
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)