Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309D04f
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1082 - 8847795-8848033,8848511-8848724 32 0.28
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584... 29 2.0
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 29 2.6
04_03_0074 - 10705413-10705523,10705602-10706330 29 2.6
12_01_0060 - 499291-501228 28 3.5
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 28 3.5
07_03_1069 + 23743031-23744062 28 4.6
12_01_0651 - 5507935-5509638 27 6.0
08_02_0383 - 16539472-16539633,16543044-16543205 27 6.0
01_01_0759 + 5855467-5855639,5855753-5855815,5855914-5856057,585... 27 6.0
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 27 8.0
06_01_0198 + 1529190-1530371 27 8.0
03_06_0048 - 31274899-31277193 27 8.0
01_02_0027 - 10331614-10331737,10332435-10332526,10332977-103330... 27 8.0
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 31.9 bits (69), Expect = 0.28
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 201 WFLQPTKYENDVLFFIYNREYNDALKLG 118
W T Y DVL F YN+EY+D +G
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDVAVVG 86
>01_01_0758 +
5843702-5843874,5844021-5844083,5844174-5844290,
5847180-5847945
Length = 372
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -3
Query: 447 LALKLGPTLDPANERLAYGDGKEKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSS 271
+AL GP L P N A+G G E S + + W + + N ++ ++ L S
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGSSGAATR--ARWVTGTLLMLLSNVTWSLWIVLMS 202
>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 37 PGEDVRETSYFTIVSKCHTVSRSVHNPTELQSIV 138
PGE +R T + S CHT + V T + IV
Sbjct: 1377 PGETIRVTKNLRVCSDCHTAIKLVSRITHREIIV 1410
>04_03_0074 - 10705413-10705523,10705602-10706330
Length = 279
Score = 28.7 bits (61), Expect = 2.6
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = -2
Query: 418 SRERETCIRRW*GKEQRPHQLEVHYLVGEQQSVLQDPQH*VQPVLETKFDD*LQHSRP-C 242
SR R R K Q PHQL G+++ Q+ + + F D + HSR
Sbjct: 157 SRARSEAYRLLQTKNQHPHQLGTAGYAGKEEEWQQEDEEAEESNTPLVFGD-IPHSRARN 215
Query: 241 YIRHQHRRHHQGAV-VPPAHEVRKRRPVLHLQSRVQRCFEA 122
+ R +++++ G + +P + R R + L + Q EA
Sbjct: 216 WARARYQKNVDGTIFMPYPEDQRVYRAINELVAEQQASQEA 256
>12_01_0060 - 499291-501228
Length = 645
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 37 PGEDVRETSYFTIVSKCHTVSRSVHNPTELQSIV 138
PGE +R T + S CHT + + T + IV
Sbjct: 592 PGETIRVTKNLRVCSDCHTAIKLISRITHREIIV 625
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 237 FGTNTADTTREQWFLQPTKYENDVLFFIYNRE 142
FG +T+ E LQP K EN +LF + R+
Sbjct: 753 FGCSTSIMVSEGDLLQPEKIENGILFNVVKRD 784
>07_03_1069 + 23743031-23744062
Length = 343
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -2
Query: 253 SRPCYIRHQHRRHHQGAVVPPAHEVRKRRPVLHLQSRVQRC 131
SRPC R + R V PPA RKR P + RC
Sbjct: 58 SRPCRARKRGRPSVVPPVSPPAGAKRKRAPAYPVPVAPLRC 98
>12_01_0651 - 5507935-5509638
Length = 567
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 252 QDRVIFGTNTADTTREQWFLQPTKYENDVLFFIYNREYNDALKLGRI 112
QD I N TRE+W + T E ++L NR Y D K+ I
Sbjct: 154 QDATIRKMNNGYWTREEWPPKDTWPELEMLAMESNRSYLDPWKVSSI 200
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Frame = -3
Query: 309 HNTKYNQYLKLSS-------TTDCNTQDRVIFGTNTADTTREQW 199
H+ YN+Y+K +S T DCN DRV + + R+ W
Sbjct: 26 HHKMYNRYVKRTSKFMAHDETEDCNIGDRVKLDPSRPLSKRKHW 69
>01_01_0759 +
5855467-5855639,5855753-5855815,5855914-5856057,
5856146-5856920
Length = 384
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = -3
Query: 447 LALKLGPTLDPANERLAYGDGKEKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSST 268
+AL GP + P N A+G G + S T W + + N ++ + L ++
Sbjct: 155 IALYAGPAISPVNHHRAFGGGGGGGHESASATTRTRWVKGTLLMLLSNATWSLWTVLMAS 214
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 229 QHRRHHQGAVVPPAHEVRKRRPVLHLQSRVQRCF 128
Q RR H G ++ P EV HL RC+
Sbjct: 643 QQRRSHGGGMIDPVGEVWSGHYSKHLVGAAHRCY 676
>06_01_0198 + 1529190-1530371
Length = 393
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 378 FPYHRRMQVSRSRDQEWGRA 437
F +++R+ VSRS D E+GRA
Sbjct: 286 FCWYQRLHVSRSPDTEYGRA 305
>03_06_0048 - 31274899-31277193
Length = 764
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 362 MRSLFFSLPSPYASLSFAGSRVG 430
MR+ S P+P AS+ FAG++VG
Sbjct: 461 MRAYALSDPNPTASIVFAGTQVG 483
>01_02_0027 -
10331614-10331737,10332435-10332526,10332977-10333055,
10333110-10333408,10335310-10335588
Length = 290
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 433 RPHS*SRERETCIRRW*G 380
R HS RER+ C+R+W G
Sbjct: 26 RLHSGERERKLCVRKWMG 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,720,047
Number of Sequences: 37544
Number of extensions: 223581
Number of successful extensions: 821
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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