Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D04f
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)                      29   1.5  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.0  
SB_27141| Best HMM Match : zf-CW (HMM E-Value=3.1)                     28   4.7  
SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)                     27   6.2  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.2  
SB_54781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_11040| Best HMM Match : ATP-synt_8 (HMM E-Value=0.51)               27   8.2  
SB_10291| Best HMM Match : Ataxin-2_N (HMM E-Value=8)                  27   8.2  

>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
          Length = 249

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 447 LALKLGPTLDPANERLAYGD 388
           +++KL P +DP   RLAYGD
Sbjct: 6   ISVKLPPDIDPTKARLAYGD 25


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/67 (29%), Positives = 26/67 (38%)
 Frame = -3

Query: 336 ENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQWFLQPTKYENDVLFF 157
           E N  Y   +NT+YN        T+ NT+    + T   +   E      T Y  D    
Sbjct: 365 EYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYITEYITEYNTDYNTD---- 420

Query: 156 IYNREYN 136
            YN EYN
Sbjct: 421 -YNTEYN 426



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -3

Query: 336 ENNRVYFKIHNTKYNQYLKLSST---TDCNTQDRVIFGTNTADTTREQWFLQPTKYENDV 166
           E N  Y   +NT+Y +Y    +T   TD NT+    + T        ++  + T+Y  + 
Sbjct: 275 EYNTEYNTEYNTEYTEYNTEYNTEYNTDYNTEYNTEYNTEYNTEYNTEYNTEYTEYNTE- 333

Query: 165 LFFIYNREYN 136
               YN EYN
Sbjct: 334 ----YNTEYN 339



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = -3

Query: 336 ENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQWFLQPTKYENDVLFF 157
           E N  Y   +NT+YN        T+ NT+    + T+  +   E      T+Y  +    
Sbjct: 515 EYNTEYNTEYNTEYNTEYNTEYNTEYNTEYITEYNTDYTEYNTEYNNEYNTEYNTE---- 570

Query: 156 IYNREYN 136
            YN EYN
Sbjct: 571 -YNTEYN 576



 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/67 (28%), Positives = 25/67 (37%)
 Frame = -3

Query: 336 ENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQWFLQPTKYENDVLFF 157
           E N  Y   +NT YN        T+ NT+    + T   +   E      T Y  +    
Sbjct: 290 EYNTEYNTEYNTDYNTEYNTEYNTEYNTEYNTEYNTEYTEYNTEYNTEYNTDYNTE---- 345

Query: 156 IYNREYN 136
            YN EYN
Sbjct: 346 -YNTEYN 351


>SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -3

Query: 336 ENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQWFLQPTKYENDVLFF 157
           E N  Y   +NT+YN        T+ NT+    + T        ++  + T+Y  +    
Sbjct: 84  EYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYNTE---- 139

Query: 156 IYNREYN 136
            YN EYN
Sbjct: 140 -YNTEYN 145


>SB_27141| Best HMM Match : zf-CW (HMM E-Value=3.1)
          Length = 397

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 7   ASDCLERCNEPGEDVRETSYFTIVSKCHTVSRSV 108
           AS+ L RCN P +DV +    +   +C T+  +V
Sbjct: 71  ASEKLSRCNMPYDDVSDPEDISSAFQCFTLEENV 104


>SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 32  TNQEKMSGRPATSPSCPNAIRSPEASTILPSFKASLYSRL*MKNRTS 172
           +N+  MS RP+++ S P+  +  ++S +     AS  SRL M  R S
Sbjct: 111 SNRPSMSHRPSSTLSEPDPAKQRKSSDVSHRLSASPNSRLPMIRRVS 157


>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
          Length = 1376

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 1    SVASDCLERCNEPGEDVRETSYFTIVSKCHTVSRSVHNPTEL 126
            ++ SD L   +E GED+ E + F ++ KC  +    + PT +
Sbjct: 1331 NIVSDAL---HENGEDIDEHNSFEVLKKCRYLRMPRYQPTPM 1369


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 22  ERCNEPGEDVRETSYFTIVSKCHTVSRSVHNPTE 123
           E CNEP +    T+   + SK  T S+  H PTE
Sbjct: 10  ENCNEPKQTSGSTTNVDVNSKSETASKP-HIPTE 42


>SB_54781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 427 HS*SRERETCIRRW*GKEQRPHQLEVHYL 341
           H  S+ERE C +RW   E  P    + +L
Sbjct: 154 HQYSKEREVCYQRWPADEWLPQAYSMFWL 182


>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 471  KLIYRNYNLALKLGPTLDPANERLAYGDGKEKNSDLISWK 352
            KL+Y N +   KL  TL    E  A  DG  K +   +WK
Sbjct: 1040 KLLYNNISNFAKLASTLVHLGEYQAAVDGARKANSTKTWK 1079


>SB_11040| Best HMM Match : ATP-synt_8 (HMM E-Value=0.51)
          Length = 128

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 244 CYIRHQHRRHHQGAVV 197
           CY RH+H  HH   +V
Sbjct: 61  CYHRHKHHHHHAAVIV 76


>SB_10291| Best HMM Match : Ataxin-2_N (HMM E-Value=8)
          Length = 266

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
 Frame = -3

Query: 381 EKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGT--NTADTTR 208
           E N+D   +      E N  Y   +NT+YN        T+ NT+    + T  NT  T  
Sbjct: 60  EYNTDYTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTDYNTEYTEY 119

Query: 207 EQWFLQPTKYENDVLFFIYNREYN 136
              +      E +  +  Y  EYN
Sbjct: 120 NTEYNTEYNTEYNTEYTEYYTEYN 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,534,700
Number of Sequences: 59808
Number of extensions: 264359
Number of successful extensions: 883
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)