Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D04f
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   0.99 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.2  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 61  SYFTIVSKCHTVSRSVHNPTELQSIVVLAIVDEEQDVVFV 180
           S  T+V  C     S  + T++ S+++ ++    QD+VF+
Sbjct: 124 SKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVFI 163


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 247 PCYIRHQHRRHHQ 209
           P Y  H H  HHQ
Sbjct: 68  PIYQSHHHLHHHQ 80


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 232 HQHRRHHQGAVVPPAH 185
           HQH  H  G  + P H
Sbjct: 336 HQHGNHTMGPTMGPPH 351


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 333 NNRVYFKIHNTKYNQYLKL 277
           NN   +  +N  YN Y KL
Sbjct: 99  NNYNNYNYNNNNYNNYKKL 117


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 68  SPSCPNAIRSPEASTILPSFKASLYSRL*MKNRTS 172
           SP CP A R   +++I      S YS    +NR S
Sbjct: 209 SPLCPPAPRLTNSNSIKHESDNSDYSHTTDENRHS 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,928
Number of Sequences: 438
Number of extensions: 2742
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)