Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D04f
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41660.1 68415.m05147 expressed protein contains Pfam profile...    27   5.1  
At1g24090.1 68414.m03039 RNase H domain-containing protein very ...    27   5.1  
At3g23330.1 68416.m02943 pentatricopeptide (PPR) repeat-containi...    27   6.7  
At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi...    27   8.9  

>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 297

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 59  PATSPSCPNAIRSPEASTILPS 124
           P TSP+  + +RSP +S ++PS
Sbjct: 22  PVTSPARSSHVRSPSSSALIPS 43


>At1g24090.1 68414.m03039 RNase H domain-containing protein very low
           similarity to GAG-POL precursor [Oryza sativa (japonica
           cultivar-group)] GI:5902445; contains Pfam profiles
           PF00075: RNase H, PF04134: Protein of unknown function,
           DUF393
          Length = 535

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 49  VRETSYFTIVSKCHTVSRSVHNPTELQSIVVLAIVDEEQDVVFVLR 186
           V  +S F I S     SRS    +++ S  V++ VD+E+D  FV+R
Sbjct: 43  VAVSSVFGICSVHSYSSRSKAVKSKMLSSTVVSAVDKEKDAFFVVR 88


>At3g23330.1 68416.m02943 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 679

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 34  EPGEDVRETSYFTIVSKCHTVSRSVHNPTELQSIV 138
           EPG  +R T    I + CH   + +   TE + IV
Sbjct: 625 EPGTTIRVTKNIRICTDCHVAIKFISKITEREIIV 659


>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 792

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 34  EPGEDVRETSYFTIVSKCHTVSRSVHNPTELQSIV 138
           EPG ++R      +   CHTV++ +   TE   +V
Sbjct: 738 EPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVV 772


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,353,005
Number of Sequences: 28952
Number of extensions: 177361
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)