Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   3.9  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   3.9  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    25   5.2  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   6.8  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   9.0  

>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 450 PANVQALLDTILFTIA 403
           PAN+QALL+ I+F IA
Sbjct: 517 PANLQALLNRIIFIIA 532


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 231 VLPHRRRCQPKRGRSGIREGQWFDATTSR 145
           V PH+RR   +R     R    F ATT R
Sbjct: 44  VTPHKRRALARRNSLARRRSNVFSATTPR 72


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 182 FVKGNGLMQPLPGLVQGINSITNSQTITAVTWHSSS 75
           +V GNG++QPL  ++Q  +S ++   +   TW  S+
Sbjct: 199 YVLGNGVLQPLLNILQ--SSASDVSMLRNATWTLSN 232


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 345 RKVPVYLFRDINETSERW 398
           R++P YL  D NE+S  W
Sbjct: 274 RRIPSYLANDANESSTIW 291


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 140 PNLEVVASNHCPS 178
           P LE V SNHCPS
Sbjct: 59  PFLENVTSNHCPS 71


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 294  KTLFSNLRLKTFILHSYRKVPVYLFRDIN 380
            KTL S+L L  F LH+Y+  P+Y+  +I+
Sbjct: 1235 KTL-SSLAL-VFALHNYKPTPLYVMDEID 1261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,864
Number of Sequences: 5004
Number of extensions: 42185
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)