Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309D03f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_5049| Best HMM Match : SSF (HMM E-Value=0.26) 28 4.1
SB_21397| Best HMM Match : Tropomodulin (HMM E-Value=0) 28 5.4
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06) 27 7.1
SB_48893| Best HMM Match : CUB (HMM E-Value=0.11) 27 9.4
SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0) 27 9.4
SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06) 27 9.4
>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 128 NSITNSQTITAVTWHSSS 75
+S++ S TITA+ WH SS
Sbjct: 288 HSVSQSDTITAIAWHPSS 305
>SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)
Length = 442
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = -3
Query: 195 GRSGIREGQWFDATTSRFGAGY*FDN 118
GR IRE WF+ATTS GY DN
Sbjct: 340 GRRSIRECDWFNATTSN-STGY-IDN 363
>SB_21397| Best HMM Match : Tropomodulin (HMM E-Value=0)
Length = 373
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 206 SRREGDQVFVKGNGLMQPLPGLVQG 132
+ RE F+KG+GL + PG+V+G
Sbjct: 145 AEREASDRFLKGSGLKKYTPGIVKG 169
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 133 PCTK-PGSGCIK-PLPFTNT*SPSLRLTPTPVGQNI 234
PC + SG ++ LP +T SP+L +TP PV NI
Sbjct: 974 PCQRLTNSGLVEMKLPIQST-SPNLGMTPQPVADNI 1008
>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1079
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 364 YLETLTKQVKDGSSYGEKNSIQQCLHICWSCTENI 468
Y E +TK V G S +S +++ WSC I
Sbjct: 14 YHECMTKPVAKGGSEEPPHSTGSLVNVAWSCVRRI 48
>SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 252 HHKLDLTLV*FIYNKTLFSNLRLKTF 329
H+KL L +V FIY K+L N RL F
Sbjct: 95 HYKLALNIVLFIYPKSLPLNSRLCVF 120
>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 506 MRPLCWMPQHFXYMFSVQDQQMCKHC 429
+RP+ W+ Q+F + +Q Q HC
Sbjct: 248 IRPIYWLVQYFFFKTPIQGAQTTIHC 273
>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
Length = 421
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 116 NSQTITAVTWHSSSWMQDQQ*NHSTNEH 33
NS IT +TW S SW+Q HST +
Sbjct: 26 NSPDITKITWISHSWLQYSP-PHSTQTY 52
>SB_48893| Best HMM Match : CUB (HMM E-Value=0.11)
Length = 352
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 82 ECQVTAVIVWEFVIELIPCTKPGSGCIKPLPFTNT*SPSLRLTPTPVGQN 231
E + + + V IPCT P C P+ FT + + + VG N
Sbjct: 5 EILLALIFIPSLVAAEIPCTNPKFSCTDPMLFTKL-DDEISVGESSVGSN 53
>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
Length = 260
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -1
Query: 245 MNTLMFCPTG---VGV-SRREGDQVFVKGNGLMQPLPGLVQGINSITNS 111
MN M C T +GV SR E +GN + +PL G+ QG NS
Sbjct: 177 MNKTMLCRTHTKWIGVHSRYEQIATLPQGNKVTKPLIGVTQGFCVTVNS 225
>SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 96 CGDCLGIRYRINTLHQT-WKWLHQTIALHEY 185
CG CLG+RY + + W+ H+ + EY
Sbjct: 120 CGGCLGVRYCSSLCQRRHWEEEHRRVCTGEY 150
>SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)
Length = 776
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 300 MSYYK*TKLELSLICDVLDEHTNVLPH 220
+ Y + LE+ +CD LD+ TN+L +
Sbjct: 330 LEYNRTETLEIKAVCDRLDDGTNILDY 356
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,796,994
Number of Sequences: 59808
Number of extensions: 319638
Number of successful extensions: 791
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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