Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   1.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.8  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 370 ETLTKQVKDGSSYGEKNSIQQCLHICWSCTEN 465
           + L K + D   +     I + LH+  +C EN
Sbjct: 71  DDLIKAIIDSDRHSTTREIAEKLHVSHTCIEN 102


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 489 PAKWPHQKRR 518
           P KWPH+ +R
Sbjct: 490 PGKWPHEDKR 499


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 489 PAKWPHQKRR 518
           P KWPH+ +R
Sbjct: 580 PGKWPHEDKR 589


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 212 GVSRREGDQVFVKGNGLMQPLPGLVQGINSI 120
           GV   +G Q  V+G   +Q +PGL+QG+  +
Sbjct: 855 GVQGVQGVQG-VQGVQGVQGVPGLLQGVQQV 884


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,489
Number of Sequences: 438
Number of extensions: 2966
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)