Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50030.1 68416.m05470 hypothetical protein                          28   3.3  
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           28   4.4  
At5g43950.1 68418.m05377 expressed protein                             27   7.7  

>At3g50030.1 68416.m05470 hypothetical protein 
          Length = 501

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 412 EKNSIQQCLHICWSCTENIYXKCCGIQQSGRIK 510
           E+  ++  + I  +C +N+Y    G++  GR+K
Sbjct: 167 EEEIVKLAMEIATNCLKNVYKSFLGVEDRGRLK 199


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 134 GINSITNSQTITAVTWHSSSWMQDQQ*NHSTNEH 33
           GI   + + TI   T+H++S  QD   +H  N+H
Sbjct: 2   GITKTSPNTTILLKTFHNNSMSQDYHHHHHHNQH 35


>At5g43950.1 68418.m05377 expressed protein
          Length = 566

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 149 EVVASNHCPSRIPDLPLFG*HRRLWGKTLVCSSRTSQIRLNSSL 280
           E+VA+ +    + + P  G + R WG  +V +SR+   +LN  L
Sbjct: 484 EIVAAEYLRGAVVEPPWLG-YMREWGPKIVYNSRSEIEKLNERL 526


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,990,996
Number of Sequences: 28952
Number of extensions: 223229
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)