Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D01f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q50LG6 Cluster: Plasminogen; n=2; Percomorpha|Rep: Plas...    36   0.74 
UniRef50_Q28398 Cluster: Apolipoprotein; n=1; Erinaceus europaeu...    35   1.3  
UniRef50_Q7TP84 Cluster: Ab1-346; n=1; Rattus norvegicus|Rep: Ab...    34   1.7  
UniRef50_A4IGA7 Cluster: Hgf1 protein; n=7; Clupeocephala|Rep: H...    33   3.0  

>UniRef50_Q50LG6 Cluster: Plasminogen; n=2; Percomorpha|Rep:
           Plasminogen - Oryzias latipes (Medaka fish) (Japanese
           ricefish)
          Length = 797

 Score = 35.5 bits (78), Expect = 0.74
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 92  PHFHCHAPKNYPCKNYNTDFCKRQKAREM 6
           PH H   P+NYPCK  + ++C+     +M
Sbjct: 305 PHKHSRTPENYPCKGLDNNYCRNPDHEKM 333


>UniRef50_Q28398 Cluster: Apolipoprotein; n=1; Erinaceus
            europaeus|Rep: Apolipoprotein - Erinaceus europaeus
            (Western European hedgehog)
          Length = 2869

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 116  QKC*EKTPPHFHCHAPKNYPCKNYNTDFCK 27
            Q+  E+TP H H   P NYPCKN   ++C+
Sbjct: 2799 QRWREQTP-HRHARTPDNYPCKNLVGNYCR 2827



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 92  PHFHCHAPKNYPCKNYNTDFCK 27
           PH H   P+NYP KN + ++C+
Sbjct: 110 PHSHSWTPENYPTKNLDGNYCR 131



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 92  PHFHCHAPKNYPCKNYNTDFCK 27
           PH H   P+NYP KN + ++C+
Sbjct: 296 PHSHSWTPENYPTKNLDGNYCR 317



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 92  PHFHCHAPKNYPCKNYNTDFCK 27
           PH H   P+NYP KN + ++C+
Sbjct: 482 PHSHSWTPENYPTKNLDGNYCR 503



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 92  PHFHCHAPKNYPCKNYNTDFCK 27
           PH H   P+NYP KN + ++C+
Sbjct: 668 PHSHSWTPENYPTKNLDGNYCR 689



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 92  PHFHCHAPKNYPCKNYNTDFCK 27
           PH H   P+NYP KN + ++C+
Sbjct: 854 PHSHSWTPENYPTKNLDGNYCR 875



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 92   PHFHCHAPKNYPCKNYNTDFCK 27
            PH H   P+NYP KN + ++C+
Sbjct: 1040 PHSHSWTPENYPTKNLDGNYCR 1061



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 92   PHFHCHAPKNYPCKNYNTDFCK 27
            PH H   P+NYP KN + ++C+
Sbjct: 1226 PHSHSWTPENYPTKNLDGNYCR 1247



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 92   PHFHCHAPKNYPCKNYNTDFCK 27
            PH H   P+NYP KN + ++C+
Sbjct: 1412 PHSHSWTPENYPTKNLDGNYCR 1433



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 92   PHFHCHAPKNYPCKNYNTDFCK 27
            PH H   P+NYP KN + ++C+
Sbjct: 1598 PHSHSWTPENYPTKNLDGNYCR 1619



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 92   PHFHCHAPKNYPCKNYNTDFCK 27
            PH H   P+NYP KN + ++C+
Sbjct: 1784 PHSHSWTPENYPTKNLDGNYCR 1805



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 92   PHFHCHAPKNYPCKNYNTDFCK 27
            PH H   P+NYP KN + ++C+
Sbjct: 1970 PHSHSWTPENYPTKNLDGNYCR 1991


>UniRef50_Q7TP84 Cluster: Ab1-346; n=1; Rattus norvegicus|Rep:
           Ab1-346 - Rattus norvegicus (Rat)
          Length = 759

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 116 QKC*EKTPPHFHCHAPKNYPCKNYNTDFCK 27
           Q+  E+TP H H   P+N+PCKN   ++C+
Sbjct: 305 QRWSEQTP-HRHNRTPENFPCKNLEENYCR 333


>UniRef50_A4IGA7 Cluster: Hgf1 protein; n=7; Clupeocephala|Rep: Hgf1
           protein - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 712

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 92  PHFHCHAPKNYPCKNYNTDFCKRQKAREM 6
           PH H + P NY CK+   ++C+     E+
Sbjct: 316 PHIHSYTPHNYKCKDLRENYCRNPDGSEI 344


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,429,050
Number of Sequences: 1657284
Number of extensions: 8841677
Number of successful extensions: 25382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25364
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)