Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    28   0.97 
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   1.3  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    26   3.9  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   3.9  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    26   3.9  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   3.9  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    25   5.2  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   6.8  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   6.8  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   9.0  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 233 STFRFSQYNQIFSDI*YCYF-LFYRFETIATIAVFSTLSFKSSLLVVINGNL*IIKTLMS 409
           STF    + Q F DI YCYF + +R    AT    ++   K +L   +  N    K L+ 
Sbjct: 195 STFPIDGFEQQFFDITYCYFPITFRAPPDATNLAITSDDLKIALRETLVANDAFSKLLLP 254

Query: 410 KL 415
            L
Sbjct: 255 AL 256


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 323 LLLSFQIDKTKNNNIIYH*RFDCIVRI*KSKSYGRWGRLWP 201
           L+    +  T     +YH  F  + R     S+G WG LWP
Sbjct: 100 LICGILVATTGRPGAVYHISFPVLSR----SSFGTWGSLWP 136


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 192 VHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLS 76
           +H+CLPPL R    +   K +P    +    NS   PLS
Sbjct: 58  IHKCLPPLQRN-NTIRKRKRNPFLADRPYCINSEDMPLS 95


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 228 VWTLGTSLAQRNVHRCLPPLPRQVYCLLHPKPSPLRPAKVL 106
           V  L  S  Q    +   PL   +  ++  KP P RP K L
Sbjct: 623 VKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYL 663


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 172 WRKTAVNIPLGQRRPQRPYDFDF*ILTI 255
           WR T +  P G ++ +   DF F IL I
Sbjct: 149 WRHTCLRYPFGMQQMELLVDFSFSILLI 176


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 334 EHSDCCYRFKSIKQKITISYITKDLIVL*ESKSRSR 227
           E +  CY F  +    T++Y+ ++++ L   KSR +
Sbjct: 421 ESAGACYTFMHLLYHTTLTYLLRNVLDLFPEKSRQK 456


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 278 IYH*RFDCIVRI*KSKSYGRWGRLWP 201
           +YH  F  + R     S+G WG LWP
Sbjct: 113 VYHISFPVLSR----SSFGIWGSLWP 134


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 174 EEDSGEHSSGPETSPASIRLRLLDSHNTIK 263
           EED+   S   ++SP    +R+L    T+K
Sbjct: 287 EEDANADSKKEDSSPCGYIIRILSGEQTVK 316


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 109  HFCWSEWRWLRMKKTVYLTWEW 174
            HF  SEWRW  + + ++L +++
Sbjct: 978  HFLISEWRWEDVAQILFLIFDF 999


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 124 PTSKSAKRKLHLISIVTH 71
           P+S S  RK+H+I ++TH
Sbjct: 777 PSSLSLLRKVHIIPLLTH 794


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,962
Number of Sequences: 5004
Number of extensions: 39051
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)