Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309D01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0510 + 24420402-24422582                                         29   3.0  
10_05_0031 + 8356046-8356361,8356439-8356648,8356735-8357043,835...    28   5.2  
04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754...    28   5.2  
03_02_0789 + 11207769-11208059,11208370-11208557,11208701-112097...    28   5.2  
08_01_0814 + 7905561-7906041,7906334-7906434,7907792-7907888,790...    27   6.9  
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396...    27   9.1  

>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 118 WSEWRWLRMKKTVYLTWEWRKTAVNI 195
           W EWRW    KT++ +W + KT++ +
Sbjct: 413 WLEWRWNFRVKTMWDSWRY-KTSIGV 437


>10_05_0031 +
           8356046-8356361,8356439-8356648,8356735-8357043,
           8357225-8357347,8357428-8357502,8357597-8357687,
           8357775-8357866,8357890-8358020
          Length = 448

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 135 ASDEEDSIPDVGVEEDSGE 191
           A+D+ D++ DVG EED GE
Sbjct: 318 ANDDVDAVVDVGSEEDHGE 336


>04_04_1161 +
           31374240-31374403,31374495-31374812,31375347-31375493,
           31375674-31375754,31375799-31375886,31375999-31376176,
           31376705-31376794,31376795-31376866,31377247-31377257
          Length = 382

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 258 LYCENLKVEVVWTLGTSLAQRNVHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTS 88
           L+C  ++  + W L    A   +   +P +P     L  PK  P++P  +L   S+S
Sbjct: 155 LHCHPIRAFLNWHLVRYKAAEIIKDLIPQIPEFNDLLKLPKGGPIKPHNILPIGSSS 211


>03_02_0789 +
           11207769-11208059,11208370-11208557,11208701-11209785,
           11210163-11210288,11210367-11210605,11210688-11210806,
           11210894-11211014
          Length = 722

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 204 PETSPASIRLRLLDSHNTIKSLVIYDIVIFCFID 305
           P+T P  +R  L ++  T+K L I D+V F F+D
Sbjct: 422 PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMD 455


>08_01_0814 +
           7905561-7906041,7906334-7906434,7907792-7907888,
           7908432-7908493,7909500-7909589
          Length = 276

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 162 DVGVEEDSGEHSSGPETSPASIRL 233
           D+  ++DS   +SGP +SPAS+ +
Sbjct: 40  DLAEDDDSSASTSGPASSPASVEV 63


>12_01_0500 +
           3966456-3968556,3968640-3969087,3969524-3969718,
           3969891-3970119
          Length = 990

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 257 CIVRI*KSKSY--GRWGRLWPRGMFTAVFLHSHVRYTVF 147
           C+ R+  +KS    RW  LWP  M  A +  SH +  V+
Sbjct: 766 CMHRLPTNKSVRGARWPELWPERMSAAPYWLSHSQVGVY 804


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,890,114
Number of Sequences: 37544
Number of extensions: 233221
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)